primerTree/NAMESPACE at master · limey-bean/primerTree · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
# Generated by roxygen2: do not edit by hand

S3method(filter_seqs,primerTree)
S3method(identify,primerTree_plot)
S3method(plot,primerTree)
S3method(print,primerTree)
S3method(print,primerTree_plot_multi)
S3method(seq_lengths,primerTree)
S3method(summary,primerTree)
export(accession2gi)
export(calc_rank_dist_ave)
export(clustalo)
export(filter_seqs)
export(get_sequence)
export(get_sequences)
export(get_taxonomy)
export(gi2taxid)
export(parse_primer_hits)
export(plot_tree)
export(plot_tree_ranks)
export(primer_search)
export(search_primer_pair)
export(seq_lengths)
export(tree_from_alignment)
import(XML)
import(ape)
import(directlabels)
import(foreach)
import(ggplot2)
import(gridExtra)
import(httr)
import(plyr)
import(stringr)
importFrom(grDevices,dev.cur)
importFrom(grDevices,dev.off)
importFrom(grDevices,dev.set)
importFrom(grDevices,pdf)
importFrom(grid,grid.locator)
importFrom(lubridate,"%--%")
importFrom(lubridate,now)
importFrom(lubridate,seconds)
importFrom(reshape2,melt)
importFrom(scales,expand_range)
importFrom(stats,na.omit)
importFrom(stats,quantile)
importFrom(utils,capture.output)
useDynLib(primerTree,rawStreamToDNAbin)