-
Notifications
You must be signed in to change notification settings - Fork 15
Open
Description
Dear Dr. Li,
I ran fermi with commands shown in documentation but failed at the 'fermi clean' step with no log info and no output. What are the possible reasons and how to troubleshoot? Thank you!
run-fermi.pl -ct12 -e ~/Downloads/fermi/fermi *.fastq.gz > ilmn_fermi_asbl.mak
make -f ilmn_fermi_asbl.mak -j 12 > ilmn_fermi_asbl.log 2>&1
- Version: 1.1-r751-beta
- input: illumina hiseq pe reads, 50x coverage human
- memory on machine: 128Gb
$ du -h * #file size of all output files
44G fmdef.ec.fmd
12K fmdef.ec.fmd.log
134G fmdef.ec.fq.gz
188K fmdef.ec.fq.gz.log
20G fmdef.ec.rank
4.0K fmdef.ec.rank.log
4.0K fmdef.fltuniq.log
531G fmdef.p0.mag.gz
4.0K fmdef.p0.mag.gz.log
0 fmdef.p1.mag.gz
0 fmdef.p1.mag.gz.log
4.0K fmdef.p2.mag.gz
4.0K fmdef.p2.mag.gz.log
4.0K fmdef.p3.mag.gz
4.0K fmdef.p3.mag.gz.log
4.0K fmdef.p4.fa.gz
4.0K fmdef.p4.fa.gz.log
4.0K fmdef.p5.fq.gz
4.0K fmdef.p5.fq.gz.log
68G fmdef.raw.fmd
12K fmdef.raw.fmd.log
4.0K ilmn_fermi_asbl.log
8.0K ilmn_fermi_asbl.mak
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels