variantBedOverlap/DESCRIPTION at master · letaylor/variantBedOverlap · GitHub

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Package: variantBedOverlap
Title: Calculates the overlap of variants in LD with features from BED files
Version: 0.1.0
Authors@R: person("Leland", "Taylor", email = "leland@ebi.ac.uk",
    role = c("aut", "cre"))
Description: Gets variants in LD with tag variant. Calculates the overlap of
    all variants with all bed files in a directory. Saves the overlaps
    data.frame. Plots the overlaps.
Depends: R (>= 3.4.0)
Remotes:
    bioc::release/GenomicRanges,
    bioc::release/IRanges,
    bioc::release/S4Vectors,
    bioc::myvariant,
    github::slowkow/proxysnps
Imports:
    plyr,
    reshape2,
    ggplot2,
    GenomicRanges,
    IRanges,
    S4Vectors,
    myvariant,
    proxysnps
Suggests:
    data.table,
    knitr,
    rmarkdown,
    testthat
License: MIT + file LICENSE
URL: https://github.com/letaylor/variantBedOverlap
BugReports: https://github.com/letaylor/variantBedOverlap/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr