download uniprot data #2
Description
This issue is complete when uniprot data is downloaded to UFRC for PPDbench. I have included a brief protocol that can be expanded on with screenshots and better documentation to remove potential ambiguity in the instructions.
Used as input data for Step 4 (step1_pdb_process.py)
- step 3 will generate "df_predict_det3" file with uniprot IDs
- https://www.uniprot.org/
- select "search" in the top right search bar
- select "customize columns"
- select "Protein names", "Sequence", "Protein families" & then close.
- select "List" in the top search bar. this will bring you to an area to enter "Uniprot IDs" from Step3. Select search.
- select "map IDs"
- download data
- select TSV format, don't compress, customize the columns & rearrange to meet: From Entry Protein names Sequence Protein families
- once the file is downloaded, open file, rename files for script input, and run step 4.