From 6ad3d75f2396269de0979a12656291299f627106 Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:35:53 -0500 Subject: [PATCH 1/6] Create spec.json --- .../methods/import_genbank_as_genome_from_staging/spec.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ui/narrative/methods/import_genbank_as_genome_from_staging/spec.json b/ui/narrative/methods/import_genbank_as_genome_from_staging/spec.json index 3d6c8a2..0874af1 100644 --- a/ui/narrative/methods/import_genbank_as_genome_from_staging/spec.json +++ b/ui/narrative/methods/import_genbank_as_genome_from_staging/spec.json @@ -123,7 +123,7 @@ "dynamic_dropdown_options": { "data_source": "custom", "service_function": "taxonomy_re_api.search_species", - "service_version": "dev", + "service_version": "release", "service_params": [ { "search_text": "prefix:{{dynamic_dropdown_input}}", From f8b53d626b38d5fc8bc8afd1d7bff60269303afd Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:36:29 -0500 Subject: [PATCH 2/6] Update kbase.yml --- kbase.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/kbase.yml b/kbase.yml index 36e3153..1e0a890 100644 --- a/kbase.yml +++ b/kbase.yml @@ -8,7 +8,7 @@ service-language: python module-version: - 1.0.55 + 1.0.56 owners: [tgu2, slebras, gaprice, qzhang] From f47f3346385abd68936ee58b7de4cd577213b92b Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:37:08 -0500 Subject: [PATCH 3/6] Update RELEASE_NOTES.md --- RELEASE_NOTES.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md index 4e1861a..cebce70 100644 --- a/RELEASE_NOTES.md +++ b/RELEASE_NOTES.md @@ -1,5 +1,8 @@ ###Release Notes +**1.0.56** +Force usage of taxonomy_re_api widget in spec.json to use the "release" version instead of "dev" + **1.0.55** Add `exact_match_on` field to the GFF Genome uploader. From 24b31ab4cf3147f0f073896e94ddecc41e0b3cfd Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:37:52 -0500 Subject: [PATCH 4/6] Update RELEASE_NOTES.md --- RELEASE_NOTES.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md index cebce70..9b88dcf 100644 --- a/RELEASE_NOTES.md +++ b/RELEASE_NOTES.md @@ -1,4 +1,4 @@ -###Release Notes +# Release Notes **1.0.56** Force usage of taxonomy_re_api widget in spec.json to use the "release" version instead of "dev" From 0426f828b7e9b56676646ec9a023c0bde76c1a5b Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:41:37 -0500 Subject: [PATCH 5/6] Update lint.yaml --- .github/workflows/lint.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml index 48ea124..0be9b12 100644 --- a/.github/workflows/lint.yaml +++ b/.github/workflows/lint.yaml @@ -13,7 +13,7 @@ jobs: python-version: 3.8 - name: Install dependencies run: pip install flake8 lintly - - uses: grantmcconnaughey/lintly-flake8-github-action@v1.0 + - uses: usama2490/lintly-flake8-github-action@v1.1 with: # The GitHub API token to create reviews with token: ${{ secrets.GITHUB_TOKEN }} From b649344b8b9b469f637b7113303f4fa92c0bc0c8 Mon Sep 17 00:00:00 2001 From: bio-boris Date: Thu, 12 May 2022 23:49:50 -0500 Subject: [PATCH 6/6] Update spec.json --- .../methods/import_gff_fasta_as_genome_from_staging/spec.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ui/narrative/methods/import_gff_fasta_as_genome_from_staging/spec.json b/ui/narrative/methods/import_gff_fasta_as_genome_from_staging/spec.json index cf60c3b..e8a9b34 100644 --- a/ui/narrative/methods/import_gff_fasta_as_genome_from_staging/spec.json +++ b/ui/narrative/methods/import_gff_fasta_as_genome_from_staging/spec.json @@ -106,7 +106,7 @@ "dynamic_dropdown_options": { "data_source": "custom", "service_function": "taxonomy_re_api.search_species", - "service_version": "dev", + "service_version": "release", "service_params": [ { "search_text": "prefix:{{dynamic_dropdown_input}}",