ModuleNotFoundError when running ESMFold predictions

[renee9904]

Hi, I was trying to run MutAmore on Google Colab.

However, I run into the ModuleNotFoundError in ESMFold predictions

I appreciate any help that may help to solve it.

Best

[samporter14]

I have this issue too

[jwinter6]

Hi guys,
just changed the installation cell towards the code from Colabfold and it worked for me.

%%time
#@title install
#@markdown install ESMFold, OpenFold and download Params (~2min 30s)
version = "1" # @param ["0", "1"]
model_name = "esmfold_v0.model" if version == "0" else "esmfold.model"
import os, time
if not os.path.isfile(model_name):
  # download esmfold params
  os.system("apt-get install aria2 -qq")
  os.system(f"aria2c -q -x 16 https://colabfold.steineggerlab.workers.dev/esm/{model_name} &")

  if not os.path.isfile("finished_install"):
    # install libs
    print("installing libs...")
    os.system("pip install -q omegaconf pytorch_lightning biopython ml_collections einops py3Dmol modelcif")
    os.system("pip install -q git+https://github.com/NVIDIA/dllogger.git")

    print("installing openfold...")
    # install openfold
    os.system(f"pip install -q git+https://github.com/sokrypton/openfold.git")

    print("installing esmfold...")
    # install esmfold
    os.system(f"pip install -q git+https://github.com/sokrypton/esm.git")
    os.system("touch finished_install")

  # wait for Params to finish downloading...
  while not os.path.isfile(model_name):
    time.sleep(5)
  if os.path.isfile(f"{model_name}.aria2"):
    print("downloading params...")
  while os.path.isfile(f"{model_name}.aria2"):
    time.sleep(5)