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serotypes.tsv
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117 lines (117 loc) · 10.7 KB
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count serotype accessionNumber comments reference link
1 1 CR931632 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
2 2 CR931633 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
3 3 CR931634 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
4 4 CR931635 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
5 5 CR931636 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
6 6A CR931638 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
- "6E(6A)" - Genetic variant of 6A Park et al 2017 Genome Announc doi.org/10.1128/genomeA.01728-16
7 6B CR931639 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
- "6E(6B)" KU168827 Genetic variant of 6B Burton et al 2016 J Clin Microbiol doi.org/10.1128/JCM.03194-15
8 6C EF538714 to EF538718 - Park et al 2007 Carbohydr Res; Park et al 2007 Infect Immun. doi.org/10.1128/JCM.02199-06
9 6D GQ848645 to GQ848646 - Bratcher et al 2010 Microbiology; Bratcher et al 2009 Microbiology doi.org/10.1099/mic.0.034116-0
10 6H KF597302 - Park et al 2015 Clin Vaccine Immunol doi.org/10.1128/CVI.00647-14
11 7F CR931643 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
12 7A CR931640 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
13 7B CR931641 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
14 7C CR931642 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
15 7D - - Kjeldsen et al 2018 Carbohydr Res doi.org/10.1016/j.carres.2018.04.011
16 8 CR931644 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
17 9A CR931645 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
18 9L CR931646 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
19 9N CR931647 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
20 9V CR931648 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
21 10F CR931652 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
22 10A CR931649 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
23 10B CR931650 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
24 10C CR931651 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
25 10D ERR051587 - Ganaie et al 2020 mbio doi.org/10.1128/mBio.00937-20
26 10F CR931652 - Yang et al 2011 Journal of Biological Chemistry doi.org/10.1074/jbc.M111.255422
27 11F CR931657 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
28 11A CR931653 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
29 11B CR931654 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
30 11C CR931655 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
31 11D CR931656 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
32 11E - - Calix et al 2010 J Infect Dis doi.org/10.1086/653123
- 11Av - A serovariant which is an intermediate variant of 11A and 11E Camilli et al 2014 PloS ONE doi.org/10.1371/journal.pone.0100722
33 11F CR931657 - Calix et al 2011 J Bacteriology doi.org/10.1128/JB.05034-11
34 12F CR931660 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
35 12A CR931658 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
36 12B CR931659 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
37 13 CR931661 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
38 14 CR931662 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
39 15F CR931666 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
40 15A CR931663 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
41 15B CR931664 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
42 15C CR931665 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
43 16F CR931668 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
44 16A CR931667 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
45 17F CR931670 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
46 17A CR931669 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
47 18F CR931674 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
48 18A CR931671 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
49 18B CR931672 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
50 18C CR931673 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
51 19F CR931678 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
52 19A CR931675 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
53 19B CR931676 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
54 19C CR931677 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
- 20 CR931679 Sub-typed to 20A and 20B Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
55 20A - - Burton et al 2012 Clin Vaccine Immunol doi.org/10.1128/CVI.00086-12
56 20B - - Burton et al 2012 Clin Vaccine Immunol doi.org/10.1128/CVI.00086-12
57 21 CR931680 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
58 22F CR931682 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
59 22A CR931681 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
60 23F CR931685 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
61 23A CR931683 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
62 23B CR931684 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
63 24F CR931688 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
64 24A CR931686 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
65 24B CR931687 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
66 24C MW683298 - Ganaie et al 2021 J Clin Microbiol doi.org/10.1128/JCM.00540-21
67 25F CR931690 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
68 25A CR931689 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
69 27 CR931691 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
70 28F CR931693 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
71 28A CR931692 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
72 29 CR931694 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
73 31 CR931695 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
74 32F CR931697 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
75 32A CR931696 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
76 33F CR931702 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
77 33A CR931698 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
78 33B CR931699 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
79 33C CR931700 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
80 33D CR931701 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
81 34 CR931703 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
82 35F CR931707 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
83 35A CR931704 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
84 35B CR931705 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
85 35C CR931706 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
86 35D KY084476 various disruptive mutations in wciG Geno et al 2017 J Clin Microbiol; Lo et al 2018 J Clin Microbiol doi.org/10.1128/JCM.00054-17
87 36 CR931708 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
88 37 CR931709 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
89 38 CR931710 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
90 39 CR931711 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
91 40 CR931712 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
92 41F CR931714 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
93 41A CR931713 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
94 42 CR931715 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
95 43 CR931716 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
96 44 CR931717 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
97 45 CR931718 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
98 46 CR931719 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
99 47F CR931721 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
100 47A CR931720 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
101 48 CR931722 - Bentley et al 2006 PloS Genet doi.org/10.1371/journal.pgen.0020031
- 9X MK606437 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- 11X MK606429 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- 16X MK606430 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- 18X1 MK606431 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- 18X2 MK606432 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- 18X3 MK606433 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- 29X MK606434 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- 33X MK606435 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- 36X MK606436 putative novel serotype based on nucleotide sequence encoding pneumococcal capsule van Tonder et al 2019 Mgen doi.org/10.1099/mgen.0.000274
- Group I nonencapsulated - do not produce capsule due to mutations or deletion of genes encoding capsule Hathaway et al 2014 J Bacteriology doi.org/10.1128/JB.186.12.3721-3729.2004
- Group II nonencapsulated - do not produce capsule due to novel genes in place of genes encoding capsule Park et al 2012 mBio; Salter et al 2012 Microbiology doi.org/10.1128/mBio.00035-12