nps_water_vulnerability/setup.R at main · juandlt-csu/nps_water_vulnerability · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
# setup script for processing functions

#Install (if necessary) and load all required packages ----------------

packageLoad <-
  function(x) {
    for (i in 1:length(x)) {
      if (!x[i] %in% installed.packages()) {
        install.packages(x[i])
      }
      library(x[i], character.only = TRUE)
    }
  }

# vector of packages to load
packages <- c(
  "akima",
  "arcgisutils",
  "arrow",
  "broom",
  "cowplot",
  "curl",
  "data.table",
  "dataRetrieval",
  "devtools",
  "dtplyr",
  "elevatr",
  "exactextractr",
  "flextable",
  "furrr",
  "geojsonsf",
  "geosphere",
  "ggforce",
  "ggfortify",
  "ggpubr",
  "ggrepel",
  # "ggseas",
  "ggthemes",
  "gridExtra",
  "here",
  "httr",
  "igraph",
  "janitor",
  "jsonlite",
  "kableExtra",
  "knitr",
  "leafem",
  "lwgeom",
  "maptiles",
  "mapview",
  "Metrics",
  "ncdf4",
  "nhdplusTools",
  "nngeo",
  "padr",
  "patchwork",
  "plotly",
  "progress",
  "RColorBrewer",
  "RCurl",
  "readxl",
  "remotes",
  "rvest",
  "scales",
  "sf",
  "SPEI",
  "stars",
  "terra",
  "tigris",
  "tmap",
  "trend",
  "units",
  "viridis",
  "xml2",
  "zoo"
)

packages <- c(packages, "tidyverse")


packageLoad(packages)

## GitHub package installs ----------------

# suggested install of github version for climateR
# remotes::install_github("mikejohnson51/AOI") # suggested! But I don't think we need it..
if (!"climateR" %in% installed.packages()) {
  remotes::install_github("mikejohnson51/climateR")
}
library(climateR)


# suggested install of Rnoaa -
if (!"rnoaa" %in% installed.packages()) {
  remotes::install_github("ropensci/rnoaa")
}
library(rnoaa)


# if (!"cft" %in% installed.packages()) {
#   devtools::install_github("earthlab/cft")
# }
# library(cft)

# source all functions --------------------------

purrr::map(list.files(
  path = "src/",
  pattern = "*.R",
  full.names = TRUE,
  recursive = TRUE
),
source)

# set noaa key (don't think this is needed anymore)
#noaa_key <-  "VAOckuKZRAFPIOuippCpMBAUPTiAtVMn"