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Description
In get_chromosomes_from_ensebml
Line 634 in 76963bf
| def get_chromosomes_from_ensembl(rsids): |
Problem:
We currently do one request per RSID and parse the json in a not-so-good way.
We can improve this method by:
1- Using a combined request to ensembl.org REST API.
2- Checking the json response properly.
Todo:
- Replace the GET request for each RSID to
variation/human/(https://rest.ensembl.org/documentation/info/variation_id) for a POST request to (https://rest.ensembl.org/documentation/info/variation_post) - Parse the json file and check properly the mappings list. We need to decide what to do if we find more than one. Currently, we just take the first.
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enhancementNew feature or requestNew feature or request