From 569fdf8603707e0026c734e1c21748b3a03f939a Mon Sep 17 00:00:00 2001
From: Sho Takeshita <76896739+takeshita-sho@users.noreply.github.com>
Date: Thu, 30 Oct 2025 19:25:56 -0400
Subject: [PATCH 1/5] Add Symbolics usage in accessor_functions.jl

---
 src/models/accessor_functions.jl | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/models/accessor_functions.jl b/src/models/accessor_functions.jl
index 8867404..5a1a927 100644
--- a/src/models/accessor_functions.jl
+++ b/src/models/accessor_functions.jl
@@ -1,3 +1,4 @@
+using Symbolics
 # function get_parameter_symbols(rs::ReactionSystem; filter_tunable = true)
 #     if filter_tunable
 #         return Symbolics.tosymbol.(tunable_parameters(rs, parameters(rs)); escape = false)
@@ -136,4 +137,4 @@ end
 
 
 
-    
\ No newline at end of file
+    

From 45f6d92937186aed199cc5f65d8b038f24ac297c Mon Sep 17 00:00:00 2001
From: Sho Takeshita <76896739+takeshita-sho@users.noreply.github.com>
Date: Thu, 30 Oct 2025 19:48:03 -0400
Subject: [PATCH 2/5] Add Symbolics package to Project.toml

---
 Project.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/Project.toml b/Project.toml
index ba128c1..b423dd4 100644
--- a/Project.toml
+++ b/Project.toml
@@ -28,6 +28,7 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 SymbolicIndexingInterface = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
 Term = "22787eb5-b846-44ae-b979-8e399b8463ab"
 UnicodePlots = "b8865327-cd53-5732-bb35-84acbb429228"
+Symbolics = "0c5d862f-8fc5-44d9-94d3-e55075b841a5"
 
 [compat]
 julia = "1.10, 1.11"

From b1e4546d3fd9ffb03ff26d8cd96a642342628796 Mon Sep 17 00:00:00 2001
From: Sho Takeshita <76896739+takeshita-sho@users.noreply.github.com>
Date: Thu, 30 Oct 2025 20:18:30 -0400
Subject: [PATCH 3/5] Update Symbolics compatibility in Project.toml

---
 Project.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/Project.toml b/Project.toml
index b423dd4..e113d40 100644
--- a/Project.toml
+++ b/Project.toml
@@ -32,6 +32,7 @@ Symbolics = "0c5d862f-8fc5-44d9-94d3-e55075b841a5"
 
 [compat]
 julia = "1.10, 1.11"
+Symbolics = "6"
 
 [extras]
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

From af23d8edf37771902a5c68d985ff2b6e2f29a0ad Mon Sep 17 00:00:00 2001
From: Sho Takeshita <76896739+takeshita-sho@users.noreply.github.com>
Date: Thu, 30 Oct 2025 20:25:16 -0400
Subject: [PATCH 4/5] Expand Symbolics compatibility versions

Updated Symbolics compatibility versions in Project.toml
---
 Project.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Project.toml b/Project.toml
index e113d40..5332094 100644
--- a/Project.toml
+++ b/Project.toml
@@ -32,7 +32,7 @@ Symbolics = "0c5d862f-8fc5-44d9-94d3-e55075b841a5"
 
 [compat]
 julia = "1.10, 1.11"
-Symbolics = "6"
+Symbolics = "6","5","4","3","2","1","0"
 
 [extras]
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

From 986c67b3e1f791322336f4cd0f4c596dcd305780 Mon Sep 17 00:00:00 2001
From: Sho Takeshita <76896739+takeshita-sho@users.noreply.github.com>
Date: Thu, 30 Oct 2025 20:40:31 -0400
Subject: [PATCH 5/5] Modify Symbolics compatibility versions

Updated Symbolics compatibility versions in Project.toml.
---
 Project.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Project.toml b/Project.toml
index 5332094..02982c2 100644
--- a/Project.toml
+++ b/Project.toml
@@ -32,7 +32,7 @@ Symbolics = "0c5d862f-8fc5-44d9-94d3-e55075b841a5"
 
 [compat]
 julia = "1.10, 1.11"
-Symbolics = "6","5","4","3","2","1","0"
+Symbolics = "5","4","3","2","1","0"
 
 [extras]
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"