Skip to content

Collapsing replicates #82

@konsta-kukkonen

Description

@konsta-kukkonen

Hello, and thanks for great package.

I'm plotting ATAC-data with two replicates / condition. In the past I have just given concatenated GRanges objects with the replicates to NormalizeToMatrix() as the signal variable, but it occurred to me that I'm not sure if the function handless the data correctly, or just uses the first score for each range as the signal value? I was thinking should I rather average the scores of the replicates before giving them to the function?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions