--tag_count_threshold on RADmarkers

[ferrojm]

Hi!
I found that although using a threshold=4 on RADmarkers module the output table includes ClusterTags below this number.

my input was:

RADmarkers -t 4 -m 2 -v > RADmarkers.output

and as example the head of such output is:

ClusterID ClusterTags SegPattern Tag SAMPLE1 SAMPLE2 SAMPLE3 SAMPLE4 SAMPLE5 SAMPLE6 SAMPLE7 SAMPLE8 SAMPLE9
1 1 -------11 ATCGGAATGGAGACACACACAGGAGCTTATCTGTCCGGACGGAGACAACAGGAAGTGAAGAGATCAGATGTCAGTGACTGCAGAACTCAGCAGGGCAGAGCAGGGAAAGCATGCAGCTGTCAGAATTGGC NA NA NA NA NA NA NA 32 9
2 1 -------11 ATCGGAACGACACGGGGGTACAAGGTACCCCCGTTCTCGTGATCGGTGGGGGTCTCGTCACTGAGACCCCCAACGATCAGCAAGTTAGGCCCTATCCTGTGGATAGGGCCTAACTTGCTAGTGGCTGCAG NA NA NA NA NA NA NA 25 28
3 1 -------11 ATCGGAGGGGATCAACTACAATGGGTGGGGGAGGACAGGGGGGCTTATGGTAGGGGGGATATGTTGGGAGTTTGTAAATTTTATTGTATGTAAGAAAAAAAACTTTCAATAAAAACTTTATTTGATTTAA NA NA NA NA NA NA NA 75 77

....

Nevertheless, I sorted out by filtering values >= 4 in the output by using awk.

I thank you for this amazing protocol!!

Cheers,
J.Martin