Hi, thank you for developing this tool. I’m running into a few questions while using SLIDE and would appreciate some guidance.
Below is part of my log file:
Setting sigma as Null.
Replacing spaces in feature names with underscores
Setting fdr at 0.1.
Setting alpha_level at 0.05.
Setting thresh_fdr at 0.2.
Setting spec at 0.3.
Setting eval_type as corr.
Setting SLIDE_iter at 1000.
Setting SLIDE_top_feats as 10.
Setting do_interacts as TRUE.
Setting sampleCV_iter as 500.
Setting sampleCV_K as 4.
Getting latent factors for delta, 0.01, and lambda, 0.5.
f_size is set as 27
The job is still running. My YAML file uses the default delta and lambda values. It has been running for 9 hrs but there is no new addition to the log file
My questions:
1)How should we choose appropriate delta and lambda parameters for it to run?
2)How long does slideCV typically take to run with ~3k features and the default parameters (e.g., sampleCV_iter = 500 and SLIDE_iter = 1000)?
Any rough benchmark or expected runtime range would be helpful.
Thank you very much for your help! Please let me know if you need any additional details about the dataset or configuration.
Hi, thank you for developing this tool. I’m running into a few questions while using SLIDE and would appreciate some guidance.
Below is part of my log file:
The job is still running. My YAML file uses the default delta and lambda values. It has been running for 9 hrs but there is no new addition to the log file
My questions:
1)How should we choose appropriate delta and lambda parameters for it to run?
2)How long does slideCV typically take to run with ~3k features and the default parameters (e.g., sampleCV_iter = 500 and SLIDE_iter = 1000)?
Any rough benchmark or expected runtime range would be helpful.
Thank you very much for your help! Please let me know if you need any additional details about the dataset or configuration.