QsRutils/DESCRIPTION at master · jfq3/QsRutils · GitHub

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Package: QsRutils
Type: Package
Title: R Functions Useful for Community Ecology
Version: 0.2.0
Authors@R: person("John", "Quensen", email = "quensenj@msu.edu",
    role = c("aut", "cre"))
Description: A collection of utility functions for community ecology analyses,
    with emphasis on workflows using the 'phyloseq' and 'vegan' packages.
    Includes functions for normalizing OTU tables, computing alpha diversity
    via rarefaction (using a fast C++ implementation), differential abundance
    comparisons with compact letter displays, primer checking for amplicon
    sequencing, and miscellaneous helpers for ordination plots and taxonomic
    name formatting.
Depends:
    R (>= 4.1.0)
Imports:
    agricolae,
    ape,
    Biostrings,
    dada2,
    data.table,
    dplyr,
    ggplot2,
    insect,
    multcompView,
    magrittr,
    phyloseq,
    Rcpp,
    readr,
    scales,
    ShortRead,
    SRS,
    stringr,
    tibble,
    vegan (>= 2.4-6)
LinkingTo: Rcpp
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Suggests:
    dunn.test,
    knitr,
    rmarkdown,
    reshape2,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
URL: https://github.com/jfq3/QsRutils
BugReports: https://github.com/jfq3/QsRutils/issues
Config/testthat/edition: 3
Additional_repositories: https://bioconductor.org/packages/release/bioc