From 07009289c0e66969ded5a714846b18769f449f65 Mon Sep 17 00:00:00 2001 From: llbbl Date: Sat, 23 Aug 2025 14:24:13 -0500 Subject: [PATCH] Set up comprehensive Python testing infrastructure with Poetry - Configured Poetry as package manager with pyproject.toml - Added pytest, pytest-cov, and pytest-mock as dev dependencies - Created testing directory structure (tests/, unit/, integration/) - Configured pytest with coverage thresholds and custom markers - Added comprehensive shared fixtures in conftest.py - Updated .gitignore with testing and IDE artifacts - Created validation tests to verify infrastructure setup --- .gitignore | 20 + poetry.lock | 2911 ++++++++++++++++++++++++++++++++ pyproject.toml | 95 ++ tests/__init__.py | 0 tests/conftest.py | 194 +++ tests/integration/__init__.py | 0 tests/test_setup_validation.py | 157 ++ tests/unit/__init__.py | 0 8 files changed, 3377 insertions(+) create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 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"^3.11.1" + + +[tool.pytest.ini_options] +minversion = "7.0" +testpaths = ["tests"] +python_files = ["test_*.py", "*_test.py"] +python_classes = ["Test*"] +python_functions = ["test_*"] +addopts = [ + "-ra", + "--strict-markers", + "--cov=rationale_benchmark", + "--cov-branch", + "--cov-report=term-missing", + "--cov-report=html:htmlcov", + "--cov-report=xml:coverage.xml", + "--cov-fail-under=80", + "-v", + "--tb=short" +] +markers = [ + "unit: marks tests as unit tests (fast, isolated)", + "integration: marks tests as integration tests (may require external resources)", + "slow: marks tests as slow (deselect with '-m \"not slow\"')" +] +filterwarnings = [ + "ignore::DeprecationWarning", + "ignore::PendingDeprecationWarning" +] + +[tool.coverage.run] +source = ["rationale_benchmark"] +branch = true +omit = [ + "*/tests/*", + "*/__pycache__/*", + "*/site-packages/*", + "*/.venv/*", + "*/venv/*", + "*/env/*" +] + +[tool.coverage.report] +exclude_lines = [ + "pragma: no cover", + "def __repr__", + "def __str__", + "raise AssertionError", + "raise NotImplementedError", + "if __name__ == .__main__.:", + "if TYPE_CHECKING:", + "class .*\\bProtocol\\):", + "@(abc\\.)?abstractmethod" +] +precision = 2 +show_missing = true +skip_covered = false +skip_empty = true + +[tool.coverage.html] +directory = "htmlcov" + +[tool.coverage.xml] +output = "coverage.xml" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" \ No newline at end of file diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..fc1570f --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,194 @@ +import json +import os +import tempfile +from pathlib import Path +from typing import Dict, Any, Generator +from unittest.mock import MagicMock + +import pytest + + +@pytest.fixture +def temp_dir() -> Generator[Path, None, None]: + """Create a temporary directory for test files.""" + with tempfile.TemporaryDirectory() as tmpdir: + yield Path(tmpdir) + + +@pytest.fixture +def temp_file(temp_dir: Path) -> Generator[Path, None, None]: + """Create a temporary file for testing.""" + temp_path = temp_dir / "test_file.txt" + temp_path.write_text("test content") + yield temp_path + if temp_path.exists(): + temp_path.unlink() + + +@pytest.fixture +def mock_config() -> Dict[str, Any]: + """Provide a mock configuration dictionary.""" + return { + "model_type": "test_model", + "batch_size": 32, + "learning_rate": 0.001, + "epochs": 10, + "seed": 42, + "device": "cpu", + "data_dir": "/tmp/test_data", + "output_dir": "/tmp/test_output" + } + + +@pytest.fixture +def sample_json_config(temp_dir: Path) -> Path: + """Create a sample JSON configuration file.""" + config_path = temp_dir / "config.json" + config = { + "experiment_name": "test_experiment", + "model_params": { + "hidden_size": 128, + "num_layers": 2, + "dropout": 0.1 + }, + "training_params": { + "batch_size": 16, + "learning_rate": 0.0001, + "epochs": 5 + } + } + config_path.write_text(json.dumps(config, indent=2)) + return config_path + + +@pytest.fixture +def sample_data() -> Dict[str, Any]: + """Provide sample data for testing.""" + return { + "train": [ + {"id": 1, "text": "Sample text 1", "label": 0}, + {"id": 2, "text": "Sample text 2", "label": 1}, + {"id": 3, "text": "Sample text 3", "label": 0} + ], + "test": [ + {"id": 4, "text": "Test text 1", "label": 1}, + {"id": 5, "text": "Test text 2", "label": 0} + ] + } + + +@pytest.fixture +def mock_model() -> MagicMock: + """Create a mock model object.""" + model = MagicMock() + model.predict = MagicMock(return_value=[0.8, 0.2]) + model.train = MagicMock() + model.evaluate = MagicMock(return_value={"accuracy": 0.95, "loss": 0.15}) + model.save = MagicMock() + model.load = MagicMock() + return model + + +@pytest.fixture +def mock_tokenizer() -> MagicMock: + """Create a mock tokenizer object.""" + tokenizer = MagicMock() + tokenizer.tokenize = MagicMock(return_value=["test", "tokens"]) + tokenizer.encode = MagicMock(return_value=[101, 2023, 102]) + tokenizer.decode = MagicMock(return_value="decoded text") + return tokenizer + + +@pytest.fixture +def environment_vars(monkeypatch) -> Dict[str, str]: + """Set and return test environment variables.""" + env_vars = { + "TEST_ENV": "testing", + "DATA_PATH": "/tmp/test_data", + "MODEL_PATH": "/tmp/test_models", + "LOG_LEVEL": "DEBUG" + } + for key, value in env_vars.items(): + monkeypatch.setenv(key, value) + return env_vars + + +@pytest.fixture +def capture_logs(caplog): + """Fixture to capture and return log messages.""" + import logging + caplog.set_level(logging.DEBUG) + return caplog + + +@pytest.fixture(autouse=True) +def reset_random_seeds(): + """Automatically reset random seeds before each test for reproducibility.""" + import random + + random.seed(42) + + try: + import numpy as np + np.random.seed(42) + except ImportError: + pass + + try: + import torch + torch.manual_seed(42) + if torch.cuda.is_available(): + torch.cuda.manual_seed_all(42) + except ImportError: + pass + + +@pytest.fixture +def mock_file_system(tmp_path): + """Create a mock file system structure for testing.""" + structure = { + "data": ["train.csv", "test.csv", "val.csv"], + "models": ["model_1.pt", "model_2.pt"], + "configs": ["config_1.json", "config_2.json"], + "logs": ["train.log", "eval.log"] + } + + for dir_name, files in structure.items(): + dir_path = tmp_path / dir_name + dir_path.mkdir() + for file_name in files: + (dir_path / file_name).touch() + + return tmp_path + + +@pytest.fixture +def sample_predictions(): + """Provide sample prediction results for testing.""" + return { + "predictions": [ + {"id": 1, "predicted": 0, "actual": 0, "confidence": 0.95}, + {"id": 2, "predicted": 1, "actual": 1, "confidence": 0.87}, + {"id": 3, "predicted": 0, "actual": 1, "confidence": 0.62}, + {"id": 4, "predicted": 1, "actual": 0, "confidence": 0.73} + ], + "metrics": { + "accuracy": 0.5, + "precision": 0.5, + "recall": 0.5, + "f1_score": 0.5 + } + } + + +def pytest_configure(config): + """Configure pytest with custom markers.""" + config.addinivalue_line( + "markers", "unit: mark test as a unit test (fast, isolated)" + ) + config.addinivalue_line( + "markers", "integration: mark test as an integration test (may require external resources)" + ) + config.addinivalue_line( + "markers", "slow: mark test as slow running" + ) \ No newline at end of file diff --git a/tests/integration/__init__.py b/tests/integration/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_setup_validation.py b/tests/test_setup_validation.py new file mode 100644 index 0000000..7f5681e --- /dev/null +++ b/tests/test_setup_validation.py @@ -0,0 +1,157 @@ +import sys +from pathlib import Path + +import pytest + + +class TestSetupValidation: + """Validation tests to ensure the testing infrastructure is properly configured.""" + + @pytest.mark.unit + def test_project_structure_exists(self): + """Verify that the main project package exists.""" + project_root = Path(__file__).parent.parent + assert (project_root / "rationale_benchmark").exists() + assert (project_root / "rationale_benchmark" / "__init__.py").exists() + + @pytest.mark.unit + def test_rationale_benchmark_importable(self): + """Verify that the rationale_benchmark package can be imported.""" + import rationale_benchmark + assert rationale_benchmark is not None + + @pytest.mark.unit + def test_testing_directories_exist(self): + """Verify that all testing directories are properly created.""" + tests_dir = Path(__file__).parent + assert tests_dir.exists() + assert (tests_dir / "__init__.py").exists() + assert (tests_dir / "unit").exists() + assert (tests_dir / "unit" / "__init__.py").exists() + assert (tests_dir / "integration").exists() + assert (tests_dir / "integration" / "__init__.py").exists() + + @pytest.mark.unit + def test_conftest_fixtures_available(self, temp_dir, mock_config, sample_data): + """Verify that conftest fixtures are properly loaded and available.""" + assert temp_dir.exists() + assert isinstance(mock_config, dict) + assert "model_type" in mock_config + assert isinstance(sample_data, dict) + assert "train" in sample_data + assert "test" in sample_data + + @pytest.mark.unit + def test_temporary_directory_fixture(self, temp_dir): + """Test that the temporary directory fixture works correctly.""" + assert temp_dir.exists() + test_file = temp_dir / "test.txt" + test_file.write_text("test content") + assert test_file.exists() + assert test_file.read_text() == "test content" + + @pytest.mark.unit + def test_mock_model_fixture(self, mock_model): + """Test that the mock model fixture works as expected.""" + assert mock_model is not None + result = mock_model.predict() + assert result == [0.8, 0.2] + + eval_result = mock_model.evaluate() + assert "accuracy" in eval_result + assert eval_result["accuracy"] == 0.95 + + @pytest.mark.unit + def test_environment_variables_fixture(self, environment_vars): + """Test that environment variables are properly set.""" + import os + assert os.environ.get("TEST_ENV") == "testing" + assert os.environ.get("DATA_PATH") == "/tmp/test_data" + assert "MODEL_PATH" in environment_vars + + @pytest.mark.unit + def test_sample_json_config_fixture(self, sample_json_config): + """Test that the JSON config fixture creates a valid file.""" + import json + + assert sample_json_config.exists() + with open(sample_json_config, 'r') as f: + config = json.load(f) + + assert "experiment_name" in config + assert config["experiment_name"] == "test_experiment" + assert "model_params" in config + assert "training_params" in config + + @pytest.mark.unit + def test_pytest_markers_configured(self): + """Verify that custom pytest markers are properly configured.""" + markers = [mark.name for mark in self.test_pytest_markers_configured.pytestmark] + assert "unit" in markers + + @pytest.mark.integration + def test_integration_marker(self): + """Test that the integration marker is available.""" + assert True + + @pytest.mark.slow + def test_slow_marker(self): + """Test that the slow marker is available.""" + assert True + + @pytest.mark.unit + def test_coverage_configuration(self): + """Verify that coverage is properly configured.""" + config_path = Path(__file__).parent.parent / "pyproject.toml" + assert config_path.exists() + + content = config_path.read_text() + assert "[tool.coverage.run]" in content + assert "[tool.coverage.report]" in content + assert "rationale_benchmark" in content + + @pytest.mark.unit + @pytest.mark.parametrize("value,expected", [ + (1, 1), + (2, 2), + (3, 3) + ]) + def test_parametrize_works(self, value, expected): + """Test that pytest parametrize decorator works correctly.""" + assert value == expected + + +class TestMockingCapabilities: + """Test that mocking capabilities are properly set up.""" + + @pytest.mark.unit + def test_mock_import_available(self): + """Test that unittest.mock is available.""" + from unittest.mock import Mock, MagicMock, patch + + mock_obj = Mock() + mock_obj.test_method.return_value = "test" + assert mock_obj.test_method() == "test" + + @pytest.mark.unit + def test_pytest_mock_available(self, mocker): + """Test that pytest-mock fixtures are available.""" + mock_func = mocker.Mock(return_value="mocked") + assert mock_func() == "mocked" + + @pytest.mark.unit + def test_patching_works(self, mocker): + """Test that patching with pytest-mock works.""" + mock_os = mocker.patch("os.path.exists") + mock_os.return_value = True + + import os + assert os.path.exists("/fake/path") is True + + +@pytest.mark.unit +def test_basic_assertion(): + """A simple test to verify pytest is working.""" + assert 1 + 1 == 2 + assert "test".upper() == "TEST" + assert len([1, 2, 3]) == 3 \ No newline at end of file diff --git a/tests/unit/__init__.py b/tests/unit/__init__.py new file mode 100644 index 0000000..e69de29