setup.log

============== System information ====
+ lsb_release -a
No LSB modules are available.
Distributor ID:	Ubuntu
Description:	Ubuntu 12.04.1 LTS
Release:	12.04
Codename:	precise
+ uname -a
Linux ip-10-108-30-136 3.2.0-31-virtual #50-Ubuntu SMP Fri Sep 7 16:36:36 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux
+ sw_vers
./setup.sh: line 21: sw_vers: command not found
+ system_profiler
./setup.sh: line 22: system_profiler: command not found
+ grep MemTotal /proc/meminfo
MemTotal:        7629500 kB
+ echo

+ echo

+ bin/cpanm -v --notest -l extlib/ --installdeps .
./setup.sh: line 33: bin/cpanm: Permission denied
+ bin/cpanm -v --notest -l extlib/ --installdeps .
./setup.sh: line 34: bin/cpanm: Permission denied
+ set -e
+ bin/cpanm -v --notest -l extlib/ --installdeps .
./setup.sh: line 36: bin/cpanm: Permission denied
+ rm -rf sample_data/json/volvox
+ bin/prepare-refseqs.pl --fasta docs/tutorial/data_files/volvox.fa --out sample_data/json/volvox
./setup.sh: line 45: bin/prepare-refseqs.pl: Permission denied
+ cd src/wig2png
+ ./configure
./setup.sh: line 74: ./configure: Permission denied
+ cd ../..
+ set -x
+ bin/wig-to-json.pl --wig docs/tutorial/data_files/volvox_microarray.wig --out sample_data/json/volvox
./setup.sh: line 78: bin/wig-to-json.pl: Permission denied
Can't locate local/lib.pm in @INC (@INC contains: extlib/lib/perl5 /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .).
BEGIN failed--compilation aborted.
+ '[' '!' -e samtools ']'
+ svn export https://samtools.svn.sourceforge.net/svnroot/samtools/trunk/samtools
./setup.sh: line 95: svn: command not found