From 7045daaf8397e7e5fee503efa399965ef4f540ef Mon Sep 17 00:00:00 2001
From: levischult <35246585+levischult@users.noreply.github.com>
Date: Thu, 5 Dec 2024 15:19:45 -0600
Subject: [PATCH 1/2] Update anaconda-env.yml

remove pypolychord + enterprise/e_e pip installs.
py polychord breaks
enterprise/e_e breaks due to circular import:
enterprise version: 3.3.4.dev153+g508e0d9
e_e version: 2.4.3
---
 anaconda-env.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/anaconda-env.yml b/anaconda-env.yml
index 05efc2e..e22b0b1 100644
--- a/anaconda-env.yml
+++ b/anaconda-env.yml
@@ -74,9 +74,9 @@ dependencies:
   - gitpython
   - bilby
   - pip:
-    - git+https://github.com/PolyChord/PolyChordLite@master
+    # - git+https://github.com/PolyChord/PolyChordLite@master
     - git+https://github.com/pennucci/PulsePortraiture.git@py3
     - git+https://github.com/bvgoncharov/enterprise_warp
     - git+https://github.com/nanograv/pint_pal@main
-    - git+https://github.com/nanograv/enterprise@dev
-    - git+https://github.com/nanograv/enterprise_extensions@dcbusyweek
+    # - git+https://github.com/nanograv/enterprise@dev
+    # - git+https://github.com/nanograv/enterprise_extensions@dcbusyweek

From 7b8cb43157b32d374cc056835c39b7971cd2d2b2 Mon Sep 17 00:00:00 2001
From: levischult <levi.schult@nanograv.org>
Date: Thu, 12 Dec 2024 16:43:37 -0600
Subject: [PATCH 2/2] added fastshermanmorrison and took out pypolychord. runs
 bjorn's example script with natsort removed from imports

---
 anaconda-env_gwafix.yml | 84 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 84 insertions(+)
 create mode 100644 anaconda-env_gwafix.yml

diff --git a/anaconda-env_gwafix.yml b/anaconda-env_gwafix.yml
new file mode 100644
index 0000000..4a5fb71
--- /dev/null
+++ b/anaconda-env_gwafix.yml
@@ -0,0 +1,84 @@
+name: IPTA_Env
+channels:
+  - conda-forge
+  - defaults
+  - demorest
+dependencies:
+  - python=3.9
+  - pip
+  - mkl
+  - jupyter
+  - ca-certificates
+  - certifi
+  - openssl
+  - libblas[build=*mkl]
+  - tempo2
+  - matplotlib
+  - astropy
+  - bokeh
+  - bottleneck
+  - dask
+  - h5py
+  - imagecodecs
+  - imageio
+  - ipympl
+  - numba
+  - numexpr
+  - pandas
+  - patsy
+  - pyerfa
+  - pytables
+  - pywavelets
+  - scikit-image
+  - scikit-learn
+  - scikit-sparse
+  - scipy
+  - seaborn
+  - seaborn-base
+  - statsmodels
+  - tifffile
+  - vincent
+  - yt
+  - gmp
+  - mpfr
+  - nose
+  - suitesparse
+  - ptmcmcsampler
+  - wand
+  - marshmallow
+  - cython
+  - healpy
+  - jplephem
+  - ephem
+  - corner
+  - pyyaml
+  - ruamel.yaml
+  - pytest
+  - docutils
+  - pytest-xdist
+  - psrchive
+  - psrqpy
+  - libstempo
+  - pint-pulsar>=0.9
+  - mpi4py
+  - enterprise-pulsar
+  - enterprise_outliers
+  - enterprise_extensions
+  - astroquery
+  - pandas
+  - pgplot
+  - pint-pal>=0.1.0
+  - pymultinest>=2.11
+  - acor>=1.1.1
+  - pypulse>=0.1.1
+  - gitpython
+  - bilby
+  - pip:
+    # - git+https://github.com/PolyChord/PolyChordLite@master
+    - git+https://github.com/pennucci/PulsePortraiture.git@py3
+    - git+https://github.com/bvgoncharov/enterprise_warp
+    - git+https://github.com/nanograv/pint_pal@main
+    - git+https://github.com/nanograv/enterprise@dev
+    - git+https://github.com/nanograv/enterprise_extensions@dcbusyweek
+    - git+https://github.com/vallis/libstempo.git
+    - fastshermanmorrison-pulsar