From 30df1c751aac7c9e20004185ca7ec5663dbe2611 Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 8 May 2025 12:00:37 -0500 Subject: [PATCH 1/3] pyproject: Fix license spec --- pyproject.toml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 7911834e..d98c4a49 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ name = "pytools" version = "2025.1.3" description = "A collection of tools for Python" readme = "README.rst" -license = { text = "MIT" } +license = "MIT" authors = [ { name = "Andreas Kloeckner", email = "inform@tiker.net" }, ] @@ -17,7 +17,6 @@ classifiers = [ "Intended Audience :: Developers", "Intended Audience :: Other Audience", "Intended Audience :: Science/Research", - "License :: OSI Approved :: MIT License", "Natural Language :: English", "Programming Language :: Python", "Programming Language :: Python :: 3 :: Only", From 39da7d3f892b697b4d0855083a213c02e1c15d3b Mon Sep 17 00:00:00 2001 From: Andreas Kloeckner Date: Thu, 8 May 2025 12:00:59 -0500 Subject: [PATCH 2/3] Fix some type annotations --- pytools/__init__.py | 58 ++++++++++++++++++++++++---- pytools/graph.py | 2 +- pytools/persistent_dict.py | 32 +++------------ pytools/test/test_persistent_dict.py | 9 ----- pytools/test/test_pytools.py | 12 ++++-- 5 files changed, 66 insertions(+), 47 deletions(-) diff --git a/pytools/__init__.py b/pytools/__init__.py index a6613ab7..ec3325b3 100644 --- a/pytools/__init__.py +++ b/pytools/__init__.py @@ -45,6 +45,7 @@ from functools import reduce, wraps from sys import intern from typing import ( + TYPE_CHECKING, Any, ClassVar, Concatenate, @@ -52,6 +53,7 @@ ParamSpec, Protocol, TypeVar, + cast, ) from typing_extensions import Self, dataclass_transform @@ -59,6 +61,11 @@ from pytools.version import VERSION_TEXT +if TYPE_CHECKING: + from _typeshed import ReadableBuffer + from typing_extensions import Self + + __version__ = VERSION_TEXT @@ -188,6 +195,8 @@ Hashing ------- +.. autoclass:: Hash + .. autofunction:: unordered_hash Sampling @@ -233,6 +242,8 @@ .. class:: P Generic unbound invariant :class:`typing.ParamSpec`. + +.. class:: _HashT """ # {{{ type variables @@ -342,7 +353,7 @@ def module_getattr_for_deprecations( # {{{ math -def delta(x, y): +def delta(x: int, y: int) -> int: if x == y: return 1 return 0 @@ -1481,10 +1492,10 @@ class _ConcatenableSequence(Generic[T_co], Protocol): .. automethod:: __add__ .. automethod:: __len__ """ - def __getitem__(self, slice) -> Self: + def __getitem__(self, slice: slice, /) -> Self: ... - def __add__(self, other: Self) -> Self: + def __add__(self, value: Self, /) -> Self: ... def __len__(self) -> int: @@ -2724,9 +2735,41 @@ def resolve_name(name): # {{{ unordered_hash -def unordered_hash(hash_instance: Any, - iterable: Iterable[Any], - hash_constructor: Callable[[], Any] | None = None) -> Any: +class Hash(Protocol): + """A protocol for the hashes from :mod:`hashlib`. + + .. automethod:: update + .. automethod:: digest + .. automethod:: hexdigest + .. automethod:: copy + """ + def update(self, obj: ReadableBuffer, /) -> None: + ... + + def digest(self) -> bytes: + ... + + def hexdigest(self) -> str: + ... + + def copy(self) -> Self: + ... + + @property + def digest_size(self) -> int: + ... + + @property + def name(self) -> str: + ... + + +_HashT = TypeVar("_HashT", bound=Hash) + + +def unordered_hash(hash_instance: _HashT, + iterable: Iterable[ReadableBuffer], + hash_constructor: Callable[[], _HashT] | None = None) -> _HashT: """Using a hash algorithm given by the parameter-less constructor *hash_constructor*, return a hash object whose internal state depends on the entries of *iterable*, but not their order. If *hash* @@ -2750,7 +2793,8 @@ def unordered_hash(hash_instance: Any, if hash_constructor is None: import hashlib from functools import partial - hash_constructor = partial(hashlib.new, hash_instance.name) + hash_constructor = cast( + "Callable[[], _HashT]", partial(hashlib.new, hash_instance.name)) assert hash_constructor is not None diff --git a/pytools/graph.py b/pytools/graph.py index f4760f43..c1cd8aec 100644 --- a/pytools/graph.py +++ b/pytools/graph.py @@ -91,7 +91,7 @@ NodeT = TypeVar("NodeT", bound=Hashable) -GraphT: TypeAlias[NodeT] = Mapping[NodeT, Collection[NodeT]] +GraphT: TypeAlias = Mapping[NodeT, Collection[NodeT]] # {{{ reverse_graph diff --git a/pytools/persistent_dict.py b/pytools/persistent_dict.py index d14849ba..4a639895 100644 --- a/pytools/persistent_dict.py +++ b/pytools/persistent_dict.py @@ -38,20 +38,20 @@ from collections.abc import Callable, Iterator, Mapping from dataclasses import fields as dc_fields, is_dataclass from enum import Enum -from typing import TYPE_CHECKING, Any, Protocol, TypeVar, cast +from typing import TYPE_CHECKING, Any, TypeVar, cast from warnings import warn from siphash24 import siphash13 +if TYPE_CHECKING: + from pytools import Hash + + class RecommendedHashNotFoundWarning(UserWarning): pass -if TYPE_CHECKING: - from _typeshed import ReadableBuffer - from typing_extensions import Self - try: import attrs except ModuleNotFoundError: @@ -85,7 +85,6 @@ class RecommendedHashNotFoundWarning(UserWarning): .. autoexception:: CollisionWarning -.. autoclass:: Hash .. autoclass:: KeyBuilder .. autoclass:: PersistentDict .. autoclass:: WriteOncePersistentDict @@ -106,27 +105,6 @@ class RecommendedHashNotFoundWarning(UserWarning): # {{{ key generation -class Hash(Protocol): - """A protocol for the hashes from :mod:`hashlib`. - - .. automethod:: update - .. automethod:: digest - .. automethod:: hexdigest - .. automethod:: copy - """ - def update(self, data: ReadableBuffer) -> None: - ... - - def digest(self) -> bytes: - ... - - def hexdigest(self) -> str: - ... - - def copy(self) -> Self: - ... - - class KeyBuilder: """A (stateless) object that computes persistent hashes of objects fed to it. Subclassing this class permits customizing the computation of hash keys. diff --git a/pytools/test/test_persistent_dict.py b/pytools/test/test_persistent_dict.py index d1969fd2..002e2589 100644 --- a/pytools/test/test_persistent_dict.py +++ b/pytools/test/test_persistent_dict.py @@ -193,7 +193,6 @@ def test_persistent_dict_deletion() -> None: finally: shutil.rmtree(tmpdir) - def test_persistent_dict_synchronization() -> None: try: tmpdir = tempfile.mkdtemp() @@ -220,7 +219,6 @@ def test_persistent_dict_synchronization() -> None: finally: shutil.rmtree(tmpdir) - def test_persistent_dict_cache_collisions() -> None: try: tmpdir = tempfile.mkdtemp() @@ -250,7 +248,6 @@ def test_persistent_dict_cache_collisions() -> None: finally: shutil.rmtree(tmpdir) - def test_persistent_dict_clear() -> None: try: tmpdir = tempfile.mkdtemp() @@ -268,7 +265,6 @@ def test_persistent_dict_clear() -> None: finally: shutil.rmtree(tmpdir) - @pytest.mark.parametrize("in_mem_cache_size", (0, 256)) def test_write_once_persistent_dict_storage_and_lookup(in_mem_cache_size) -> None: try: @@ -300,7 +296,6 @@ def test_write_once_persistent_dict_storage_and_lookup(in_mem_cache_size) -> Non finally: shutil.rmtree(tmpdir) - def test_write_once_persistent_dict_lru_policy() -> None: try: tmpdir = tempfile.mkdtemp() @@ -341,7 +336,6 @@ def test_write_once_persistent_dict_lru_policy() -> None: finally: shutil.rmtree(tmpdir) - def test_write_once_persistent_dict_synchronization() -> None: try: tmpdir = tempfile.mkdtemp() @@ -363,7 +357,6 @@ def test_write_once_persistent_dict_synchronization() -> None: finally: shutil.rmtree(tmpdir) - def test_write_once_persistent_dict_cache_collisions() -> None: try: tmpdir = tempfile.mkdtemp() @@ -390,7 +383,6 @@ def test_write_once_persistent_dict_cache_collisions() -> None: finally: shutil.rmtree(tmpdir) - def test_write_once_persistent_dict_clear() -> None: try: tmpdir = tempfile.mkdtemp() @@ -860,7 +852,6 @@ def test_keys_values_items(): finally: shutil.rmtree(tmpdir) - def global_fun(): pass diff --git a/pytools/test/test_pytools.py b/pytools/test/test_pytools.py index a7e0b4f1..4172f251 100644 --- a/pytools/test/test_pytools.py +++ b/pytools/test/test_pytools.py @@ -27,6 +27,7 @@ import logging import sys from dataclasses import dataclass +from typing import TYPE_CHECKING import pytest @@ -34,6 +35,10 @@ from pytools.tag import tag_dataclass +if TYPE_CHECKING: + from collections.abc import Sequence + + logger = logging.getLogger(__name__) @@ -671,8 +676,8 @@ def test_sphere_sampling(sampling, visualize=False): triangles = mtri.Triangulation(theta, phi) ax.plot_trisurf(points[0], points[1], points[2], triangles=triangles.triangles) - ax.set_xlim([-radius, radius]) - ax.set_ylim([-radius, radius]) + ax.set_xlim((-radius, radius)) + ax.set_ylim((-radius, radius)) ax.set_zlim([-radius, radius]) ax.margins(0.05, 0.05, 0.05) @@ -878,7 +883,8 @@ def test_permutations(): perm = list(generate_permutations([1, 2, 3, 4])) assert 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of file diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 01dd9ff4..3925eccf 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -74,6 +74,23 @@ jobs: curl -L -O https://gitlab.tiker.net/inducer/ci-support/raw/main/prepare-and-run-mypy.sh . ./prepare-and-run-mypy.sh python3 mypy + basedpyright: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + with: + python-version: '3.x' + - name: "Main Script" + run: | + curl -L -O https://tiker.net/ci-support-v0 + . ./ci-support-v0 + build_py_project_in_venv + sudo apt install libopenmpi-dev + pip install numpy attrs orderedsets pytest mpi4py matplotlib + pip install basedpyright + basedpyright + pytest: name: Pytest on Py${{ matrix.python-version }} ${{ matrix.os }} runs-on: ${{ matrix.os }} diff --git a/pyproject.toml b/pyproject.toml index d98c4a49..bb8ca525 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -106,6 +106,13 @@ required-imports = ["from __future__ import annotations"] extend-ignore-names = ["update_for_*"] +[tool.basedpyright] +reportImplicitStringConcatenation = "none" +reportUnnecessaryIsInstance = "none" +reportUnusedCallResult = "none" +reportExplicitAny = "none" + + [tool.mypy] python_version = "3.10" ignore_missing_imports = true diff --git a/pytools/test/test_persistent_dict.py b/pytools/test/test_persistent_dict.py index 002e2589..9b84e4e7 100644 --- a/pytools/test/test_persistent_dict.py +++ b/pytools/test/test_persistent_dict.py @@ -72,8 +72,7 @@ class MyStruct: def test_persistent_dict_storage_and_lookup() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict: PersistentDict[Any, int] = PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) @@ -167,13 +166,9 @@ def rand_str(n=20): with pytest.raises(NoSuchEntryError): pdict.fetch(3000) - finally: - shutil.rmtree(tmpdir) - def test_persistent_dict_deletion() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict: PersistentDict[int, int] = PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) @@ -190,12 +185,9 @@ def test_persistent_dict_deletion() -> None: with pytest.raises(NoSuchEntryError): del pdict[1] - finally: - shutil.rmtree(tmpdir) def test_persistent_dict_synchronization() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict1: PersistentDict[int, int] = PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) @@ -216,12 +208,9 @@ def test_persistent_dict_synchronization() -> None: with pytest.raises(NoSuchEntryError): pdict2.fetch(0) - finally: - shutil.rmtree(tmpdir) def test_persistent_dict_cache_collisions() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict: PersistentDict[PDictTestingKeyOrValue, int] = \ PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) @@ -245,12 +234,9 @@ def test_persistent_dict_cache_collisions() -> None: pdict.store_if_not_present(key2, 2) assert pdict[key1] == 1 - finally: - shutil.rmtree(tmpdir) def test_persistent_dict_clear() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict: PersistentDict[int, int] = PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) @@ -262,13 +248,10 @@ def test_persistent_dict_clear() -> None: with pytest.raises(NoSuchEntryError): pdict.fetch(0) - finally: - shutil.rmtree(tmpdir) @pytest.mark.parametrize("in_mem_cache_size", (0, 256)) def test_write_once_persistent_dict_storage_and_lookup(in_mem_cache_size) -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict: WriteOncePersistentDict[int, int] = WriteOncePersistentDict( "pytools-test", container_dir=tmpdir, in_mem_cache_size=in_mem_cache_size, safe_sync=False) @@ -293,12 +276,9 @@ def test_write_once_persistent_dict_storage_and_lookup(in_mem_cache_size) -> Non pdict.store_if_not_present(1, 1) assert pdict[1] == 1 - finally: - shutil.rmtree(tmpdir) def test_write_once_persistent_dict_lru_policy() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict: WriteOncePersistentDict[Any, Any] = WriteOncePersistentDict( "pytools-test", container_dir=tmpdir, in_mem_cache_size=3, safe_sync=False) @@ -333,12 +313,9 @@ def test_write_once_persistent_dict_lru_policy() -> None: val1 = pdict.fetch(1) assert pdict.fetch(1) is val1 - finally: - shutil.rmtree(tmpdir) def test_write_once_persistent_dict_synchronization() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict1: WriteOncePersistentDict[int, int] = \ WriteOncePersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) @@ -354,12 +331,9 @@ def test_write_once_persistent_dict_synchronization() -> None: with pytest.raises(ReadOnlyEntryError): pdict2[1] = 1 - finally: - shutil.rmtree(tmpdir) def test_write_once_persistent_dict_cache_collisions() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict: WriteOncePersistentDict[Any, int] = \ WriteOncePersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) @@ -380,12 +354,9 @@ def test_write_once_persistent_dict_cache_collisions() -> None: pdict.store_if_not_present(key2, 2) assert pdict[key1] == 1 - finally: - shutil.rmtree(tmpdir) def test_write_once_persistent_dict_clear() -> None: - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict: WriteOncePersistentDict[int, int] = \ WriteOncePersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) @@ -396,8 +367,6 @@ def test_write_once_persistent_dict_clear() -> None: with pytest.raises(NoSuchEntryError): pdict.fetch(0) - finally: - shutil.rmtree(tmpdir) def test_dtype_hashing() -> None: @@ -766,29 +735,26 @@ def test_xdg_cache_home() -> None: def test_speed(): import time - tmpdir = tempfile.mkdtemp() - pdict = WriteOncePersistentDict("pytools-test", container_dir=tmpdir, - safe_sync=False) - - start = time.time() - for i in range(10000): - pdict[i] = i - end = time.time() - print("persistent dict write time: ", end-start) + with tempfile.TemporaryDirectory() as tmpdir: + pdict = WriteOncePersistentDict("pytools-test", container_dir=tmpdir, + safe_sync=False) - start = time.time() - for _ in range(5): + start = time.time() for i in range(10000): - pdict[i] - end = time.time() - print("persistent dict read time: ", end-start) + pdict[i] = i + end = time.time() + print("persistent dict write time: ", end-start) - shutil.rmtree(tmpdir) + start = time.time() + for _ in range(5): + for i in range(10000): + pdict[i] + end = time.time() + print("persistent dict read time: ", end-start) def test_size(): - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict = PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) for i in range(10000): @@ -797,14 +763,12 @@ def test_size(): size = pdict.nbytes() print("sqlite size: ", size/1024/1024, " MByte") assert 1024*1024//2 < size < 2*1024*1024 - finally: - shutil.rmtree(tmpdir) def test_len(): - try: - tmpdir = tempfile.mkdtemp() - pdict = PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) + with tempfile.TemporaryDirectory() as tmpdir: + pdict: PersistentDict[int, int] = PersistentDict( + "pytools-test", container_dir=tmpdir, safe_sync=False) assert len(pdict) == 0 @@ -816,24 +780,19 @@ def test_len(): pdict.clear() assert len(pdict) == 0 - finally: - shutil.rmtree(tmpdir) def test_repr(): - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: pdict = PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) assert repr(pdict)[:15] == "PersistentDict(" - finally: - shutil.rmtree(tmpdir) def test_keys_values_items(): - try: - tmpdir = tempfile.mkdtemp() - pdict = PersistentDict("pytools-test", container_dir=tmpdir, safe_sync=False) + with tempfile.TemporaryDirectory() as tmpdir: + pdict: PersistentDict[int, int] = PersistentDict( + "pytools-test", container_dir=tmpdir, safe_sync=False) for i in range(10000): pdict[i] = i @@ -849,8 +808,6 @@ def test_keys_values_items(): == list(pdict) == [k for k in pdict]) # noqa: C416 - finally: - shutil.rmtree(tmpdir) def global_fun(): pass @@ -1042,8 +999,7 @@ def test_concurrency_threads() -> None: def test_nan_keys() -> None: # test for https://github.com/inducer/pytools/issues/287 - try: - tmpdir = tempfile.mkdtemp() + with tempfile.TemporaryDirectory() as tmpdir: keyb = KeyBuilder() pdict: PersistentDict[float, int] = PersistentDict("pytools-test", container_dir=tmpdir, @@ -1069,8 +1025,6 @@ def test_nan_keys() -> None: with (pytest.warns(CollisionWarning), pytest.raises(NoSuchEntryCollisionError)): pdict[nan_value] - finally: - shutil.rmtree(tmpdir) if __name__ == "__main__":