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https://tiker.net/ci-support-v0 + . ./ci-support-v0 + build_py_project_in_conda_env + cipip install pytest pyfmmlib scipy scipy-stubs matplotlib + cipip install basedpyright + basedpyright + docs: name: Documentation runs-on: ubuntu-latest diff --git a/doc/conf.py b/doc/conf.py index d5465141b..dc6b28635 100644 --- a/doc/conf.py +++ b/doc/conf.py @@ -1,6 +1,7 @@ from importlib import metadata from urllib.request import urlopen + _conf_url = \ "https://raw.githubusercontent.com/inducer/sphinxconfig/main/sphinxconfig.py" with urlopen(_conf_url) as _inf: @@ -39,4 +40,43 @@ ["py:class", r"TypeAliasForwardRef"], ["py:class", r"arraycontext.typing._UserDefinedArrayContainer"], ["py:class", r"arraycontext.typing._UserDefinedArithArrayContainer"], + ["py:class", r"T"], ] + + +sphinxconfig_missing_reference_aliases = { + # numpy + "NDArray": "obj:numpy.typing.NDArray", + # pytools + "ObjectArrayND": "obj:pytools.obj_array.ObjectArrayND", + # pyopencl + "WaitList": "obj:pyopencl.WaitList", + # pymbolic + "Variable": "class:pymbolic.primitives.Variable", + "Expression": "obj:pymbolic.typing.Expression", + "ArithmeticExpression": "obj:pymbolic.ArithmeticExpression", + "MultiVector": "obj:pymbolic.geometric_algebra.MultiVector", + # arraycontext + "ScalarLike": "obj:arraycontext.ScalarLike", + "ArrayOrContainerOrScalar": "obj:arraycontext.ArrayOrContainerOrScalar", + "PyOpenCLArrayContext": "class:arraycontext.PyOpenCLArrayContext", + # modepy + "mp.Shape": "class:modepy.Shape", + # meshmode + "Discretization": "class:meshmode.discretization.Discretization", + "DOFArray": "class:meshmode.dof_array.DOFArray", + # sumpy + "Kernel": "class:sumpy.kernel.Kernel", + "P2PBase": "class:sumpy.p2p.P2PBase", + "ExpansionFactoryBase": "class:sumpy.expansion.ExpansionFactoryBase", + # pytential + "sym.IntG": "class:pytential.symbolic.primitives.IntG", + "sym.DOFDescriptor": "class:pytential.symbolic.dof_desc.DOFDescriptor", + "Operand": "obj:pytential.symbolic.primitives.Operand", + "QBXForcedLimit": "obj:pytential.symbolic.primitives.QBXForcedLimit", + "TargetOrDiscretization": "obj:pytential.target.TargetOrDiscretization", +} + + +def setup(app): + app.connect("missing-reference", process_autodoc_missing_reference) # noqa: F821 diff --git a/examples/cost.py b/examples/cost.py index 008de5f05..27f568f5a 100644 --- a/examples/cost.py +++ b/examples/cost.py @@ -26,13 +26,13 @@ """Calibrates a cost model and reports on the accuracy.""" import numpy as np -import pyopencl as cl +import pyopencl as cl from meshmode.array_context import PyOpenCLArrayContext +from pytools import one -from pytential import sym, bind +from pytential import bind, sym from pytential.qbx.cost import QBXCostModel -from pytools import one # {{{ global params @@ -57,9 +57,9 @@ def starfish_lpot_source(actx, n_arms): from meshmode.discretization import Discretization from meshmode.discretization.poly_element import ( - InterpolatoryQuadratureSimplexGroupFactory) - - from meshmode.mesh.generation import make_curve_mesh, NArmedStarfish + InterpolatoryQuadratureSimplexGroupFactory, + ) + from meshmode.mesh.generation import NArmedStarfish, make_curve_mesh mesh = make_curve_mesh( NArmedStarfish(n_arms, 0.8), diff --git a/examples/fmm-error.py b/examples/fmm-error.py index 5671d133a..2223b190b 100644 --- a/examples/fmm-error.py +++ b/examples/fmm-error.py @@ -1,11 +1,9 @@ import numpy as np from meshmode.array_context import PyOpenCLArrayContext -from meshmode.mesh.generation import ( # noqa - make_curve_mesh, starfish, ellipse, drop) - +from meshmode.mesh.generation import drop, ellipse, make_curve_mesh, starfish # noqa +from sumpy.kernel import HelmholtzKernel, LaplaceKernel from sumpy.visualization import FieldPlotter -from sumpy.kernel import LaplaceKernel, HelmholtzKernel def main(): @@ -34,10 +32,12 @@ def main(): np.linspace(0, 1, nelements+1), target_order) - from pytential.qbx import QBXLayerPotentialSource from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) + + from pytential.qbx import QBXLayerPotentialSource pre_density_discr = Discretization( actx, mesh, diff --git a/examples/helmholtz-dirichlet.py b/examples/helmholtz-dirichlet.py index b3d400e62..b046a6935 100644 --- a/examples/helmholtz-dirichlet.py +++ b/examples/helmholtz-dirichlet.py @@ -3,12 +3,14 @@ from meshmode.array_context import PyOpenCLArrayContext from meshmode.discretization import Discretization -from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory +from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, +) from pytential import bind, sym from pytential.target import PointsTarget + # {{{ set some constants for use below nelements = 20 @@ -31,9 +33,10 @@ def main(mesh_name="ellipse", visualize=False): queue = cl.CommandQueue(cl_ctx) actx = PyOpenCLArrayContext(queue) - from meshmode.mesh.generation import ellipse, make_curve_mesh from functools import partial + from meshmode.mesh.generation import ellipse, make_curve_mesh + if mesh_name == "ellipse": mesh = make_curve_mesh( partial(ellipse, 1), @@ -71,8 +74,7 @@ def main(mesh_name="ellipse", visualize=False): actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(bdry_quad_order)) - from pytential.qbx import ( - QBXLayerPotentialSource, QBXTargetAssociationFailedError) + from pytential.qbx import QBXLayerPotentialSource, QBXTargetAssociationFailedError qbx = QBXLayerPotentialSource( pre_density_discr, fine_order=bdry_ovsmp_quad_order, qbx_order=qbx_order, fmm_order=fmm_order @@ -92,7 +94,7 @@ def main(mesh_name="ellipse", visualize=False): # {{{ describe bvp - from sumpy.kernel import LaplaceKernel, HelmholtzKernel + from sumpy.kernel import HelmholtzKernel, LaplaceKernel kernel = HelmholtzKernel(2) sigma_sym = sym.var("sigma") diff --git a/examples/laplace-dirichlet-3d.py b/examples/laplace-dirichlet-3d.py index 45350114e..e13e30231 100644 --- a/examples/laplace-dirichlet-3d.py +++ b/examples/laplace-dirichlet-3d.py @@ -2,12 +2,14 @@ from meshmode.array_context import PyOpenCLArrayContext from meshmode.discretization import Discretization -from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory +from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, +) from pytential import bind, sym from pytential.target import PointsTarget + # {{{ set some constants for use below nelements = 20 @@ -64,8 +66,7 @@ def main(mesh_name="torus", visualize=False): actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(bdry_quad_order)) - from pytential.qbx import ( - QBXLayerPotentialSource, QBXTargetAssociationFailedError) + from pytential.qbx import QBXLayerPotentialSource, QBXTargetAssociationFailedError qbx = QBXLayerPotentialSource( pre_density_discr, fine_order=bdry_ovsmp_quad_order, qbx_order=qbx_order, fmm_order=fmm_order, diff --git a/examples/laplace-dirichlet-simple.py b/examples/laplace-dirichlet-simple.py index 6c121b141..d6d5858bd 100644 --- a/examples/laplace-dirichlet-simple.py +++ b/examples/laplace-dirichlet-simple.py @@ -2,12 +2,14 @@ from meshmode.array_context import PyOpenCLArrayContext from meshmode.discretization import Discretization -from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory +from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, +) from pytential import bind, sym from pytential.target import PointsTarget + # {{{ set some constants for use below nelements = 20 @@ -30,9 +32,10 @@ def main(mesh_name="starfish", visualize=False): queue = cl.CommandQueue(cl_ctx) actx = PyOpenCLArrayContext(queue) - from meshmode.mesh.generation import ellipse, make_curve_mesh, starfish from functools import partial + from meshmode.mesh.generation import ellipse, make_curve_mesh, starfish + if mesh_name == "ellipse": mesh = make_curve_mesh( partial(ellipse, 1), diff --git a/examples/layerpot-3d.py b/examples/layerpot-3d.py index 8c2d9deaf..ee9c10fc8 100644 --- a/examples/layerpot-3d.py +++ b/examples/layerpot-3d.py @@ -1,12 +1,12 @@ import numpy as np from meshmode.array_context import PyOpenCLArrayContext - +from sumpy.kernel import HelmholtzKernel, LaplaceKernel, one_kernel_2d # noqa from sumpy.visualization import FieldPlotter -from sumpy.kernel import one_kernel_2d, LaplaceKernel, HelmholtzKernel # noqa from pytential import bind, sym + target_order = 5 qbx_order = 3 mode_nr = 4 @@ -32,7 +32,7 @@ def main(mesh_name="ellipsoid"): else: raise ValueError("unknown mesh name: %s" % mesh_name) - from meshmode.mesh.io import generate_gmsh, FileSource + from meshmode.mesh.io import FileSource, generate_gmsh mesh = generate_gmsh( FileSource(cad_file_name), 2, order=2, other_options=["-string", "Mesh.CharacteristicLengthMax = %g;" % h], @@ -49,10 +49,12 @@ def main(mesh_name="ellipsoid"): logger.info("%d elements", mesh.nelements) - from pytential.qbx import QBXLayerPotentialSource from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) + + from pytential.qbx import QBXLayerPotentialSource density_discr = Discretization( actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(target_order)) diff --git a/examples/layerpot.py b/examples/layerpot.py index 55ffbb56c..cb86c227e 100644 --- a/examples/layerpot.py +++ b/examples/layerpot.py @@ -1,12 +1,12 @@ import numpy as np from meshmode.array_context import PyOpenCLArrayContext +from meshmode.mesh.generation import drop, ellipse, starfish # noqa: F401 +from sumpy.kernel import HelmholtzKernel, LaplaceKernel, one_kernel_2d # noqa: F401 from sumpy.visualization import FieldPlotter -from sumpy.kernel import one_kernel_2d, LaplaceKernel, HelmholtzKernel # noqa: F401 from pytential import bind, sym -from meshmode.mesh.generation import starfish, ellipse, drop # noqa: F401 target_order = 16 qbx_order = 3 @@ -31,10 +31,12 @@ def main(curve_fn=starfish, visualize=True): np.linspace(0, 1, nelements+1), target_order) - from pytential.qbx import QBXLayerPotentialSource from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) + + from pytential.qbx import QBXLayerPotentialSource pre_density_discr = Discretization( actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(target_order)) diff --git a/examples/scaling-study.py b/examples/scaling-study.py index 569442873..f597d939e 100644 --- a/examples/scaling-study.py +++ b/examples/scaling-study.py @@ -2,12 +2,14 @@ from meshmode.array_context import PyOpenCLArrayContext from meshmode.discretization import Discretization -from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory +from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, +) from pytential import bind, sym from pytential.target import PointsTarget + # {{{ set some constants for use below nelements = 20 @@ -22,9 +24,10 @@ def make_mesh(nx, ny, visualize=False): - from meshmode.mesh.generation import ellipse, make_curve_mesh from functools import partial + from meshmode.mesh.generation import ellipse, make_curve_mesh + base_mesh = make_curve_mesh( partial(ellipse, 1), np.linspace(0, 1, nelements+1), @@ -66,8 +69,7 @@ def timing_run(nx, ny, visualize=False): actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(bdry_quad_order)) - from pytential.qbx import ( - QBXLayerPotentialSource, QBXTargetAssociationFailedError) + from pytential.qbx import QBXLayerPotentialSource, QBXTargetAssociationFailedError qbx = QBXLayerPotentialSource( density_discr, fine_order=bdry_ovsmp_quad_order, qbx_order=qbx_order, fmm_order=fmm_order diff --git a/pyproject.toml b/pyproject.toml index d53e7aca5..21ed84f7a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -39,6 +39,7 @@ dependencies = [ "pytools>=2024.1", "scipy>=1.2", "sumpy>=2022.1", + "useful-types", ] [project.optional-dependencies] @@ -77,13 +78,14 @@ extend-select = [ "E", # pycodestyle "F", # pyflakes "G", # flake8-logging-format - # "I", # flake8-isort + "I", # flake8-isort "N", # pep8-naming "NPY", # numpy "Q", # flake8-quotes "RUF", # ruff "UP", # pyupgrade "W", # pycodestyle + "TC", ] extend-ignore = [ "C90", # McCabe complexity @@ -103,27 +105,33 @@ exclude = [ "pytential/symbolic/pde/maxwell/generalized_debye.py", ] +[tool.ruff.lint.per-file-ignores] +"doc/*.py" = ["I002"] +"examples/*.py" = ["I002"] + [tool.ruff.lint.flake8-quotes] docstring-quotes = "double" inline-quotes = "double" multiline-quotes = "double" -# [tool.ruff.lint.isort] -# combine-as-imports = true -# known-first-party = [ -# "arraycontext", -# "boxtree", -# "loopy", -# "meshmode", -# "modepy", -# "pymbolic", -# "pyopencl", -# "pytools", -# ] -# known-local-folder = [ -# "pytential", -# ] -# lines-after-imports = 2 +[tool.ruff.lint.isort] +combine-as-imports = true +known-first-party = [ + "arraycontext", + "boxtree", + "loopy", + "meshmode", + "modepy", + "pymbolic", + "pyopencl", + "pytools", + "sumpy", +] +known-local-folder = [ + "pytential", +] +lines-after-imports = 2 +required-imports = ["from __future__ import annotations"] [tool.pytest.ini_options] markers = [ @@ -135,6 +143,9 @@ extend-ignore-re = [ "(?Rm)^.*(#|//)\\s*spellchecker:\\s*disable-line$" ] +[tool.typos.default.extend-words] +"nd" = "nd" + [tool.basedpyright] reportImplicitStringConcatenation = "none" reportUnnecessaryIsInstance = "none" @@ -147,9 +158,18 @@ reportUnusedParameter = "hint" # https://github.com/microsoft/pyright/issues/746 reportImportCycles = "none" +reportPrivateUsage = "hint" + pythonVersion = "3.10" pythonPlatform = "All" +ignore = [ + "pytential/symbolic/old_diffop_primitives.py", + "pytential/symbolic/pde/maxwell/generalized_debye.py", + "build", + "doc/conf.py", +] + [[tool.basedpyright.executionEnvironments]] root = "test" reportUnknownArgumentType = "hint" @@ -161,3 +181,16 @@ reportArgumentType = "hint" reportPossiblyUnboundVariable = "hint" reportGeneralTypeIssues = "hint" reportOptionalSubscript = "hint" +reportUnknownMemberType = "hint" +reportUnknownVariableType = "hint" +reportUnknownParameterType = "hint" +reportMissingParameterType = "hint" +reportAny = "none" +reportImplicitOverride = "hint" +reportUnannotatedClassAttribute = "hint" +reportPrivateLocalImportUsage = "hint" +reportPrivateImportUsage = "hint" +reportPrivateUsage = "hint" +reportUnknownLambdaType = "hint" +reportMissingTypeStubs = "hint" +reportUnusedImport = "none" diff --git a/pytential/__init__.py b/pytential/__init__.py index 939fa8580..50600621e 100644 --- a/pytential/__init__.py +++ b/pytential/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" __license__ = """ @@ -22,16 +25,17 @@ import numpy as np +from pytools import memoize_on_first_arg + import pytential.symbolic.primitives as sym -from pytential.symbolic.execution import bind from pytential.collection import GeometryCollection - -from pytools import memoize_on_first_arg +from pytential.symbolic.execution import bind def _set_up_logging_from_environment(): import logging import os + from pytential.log import set_up_logging for level_name, level in ( @@ -48,6 +52,7 @@ def _set_up_logging_from_environment(): def _set_up_errors(): import warnings + from pytential.qbx.refinement import RefinerNotConvergedWarning warnings.filterwarnings("error", category=RefinerNotConvergedWarning) @@ -58,7 +63,7 @@ def _set_up_errors(): @memoize_on_first_arg def _integral_op(discr): - from pytential import sym, bind + from pytential import bind, sym return bind(discr, sym.integral( discr.ambient_dim, discr.dim, sym.var("integrand"))) @@ -70,7 +75,7 @@ def integral(discr, x): @memoize_on_first_arg def _norm_2_op(discr, num_components): - from pytential import sym, bind + from pytential import bind, sym if num_components is not None: from pymbolic.primitives import make_sym_vector v = make_sym_vector("integrand", num_components) @@ -84,7 +89,7 @@ def _norm_2_op(discr, num_components): @memoize_on_first_arg def _norm_inf_op(discr, num_components): - from pytential import sym, bind + from pytential import bind, sym if num_components is not None: from pymbolic.primitives import make_sym_vector v = make_sym_vector("arg", num_components) diff --git a/pytential/collection.py b/pytential/collection.py index fc56ab22c..1a57322f6 100644 --- a/pytential/collection.py +++ b/pytential/collection.py @@ -1,5 +1,6 @@ from __future__ import annotations + __copyright__ = """ Copyright (C) 2013 Andreas Kloeckner Copyright (C) 2018 Alexandru Fikl @@ -30,14 +31,18 @@ from constantdict import constantdict -from pytential.symbolic.dof_desc import DOFDescriptorLike, DiscretizationStages -import pytential.symbolic.primitives as sym +from meshmode.discretization import Discretization -from pytential.target import PointsTarget, TargetBase -from pytential.source import ( - LayerPotentialSourceBase, PointPotentialSource, PotentialSource) +import pytential.symbolic.primitives as sym from pytential.qbx import QBXLayerPotentialSource -from meshmode.discretization import Discretization +from pytential.source import ( + LayerPotentialSourceBase, + PointPotentialSource, + PotentialSource, +) +from pytential.symbolic.dof_desc import DiscretizationStage, DOFDescriptorLike +from pytential.target import PointsTarget, TargetBase + __doc__ = """ .. class:: AutoWhereLike @@ -299,7 +304,7 @@ def get_connection(self, from_dd: DOFDescriptorLike, to_dd: DOFDescriptorLike): def get_discretization( self, geometry: Hashable, - discr_stage: DiscretizationStages | None = None + discr_stage: DiscretizationStage | None = None ) -> GeometryLike: """Get the geometry or discretization in the collection. diff --git a/pytential/linalg/__init__.py b/pytential/linalg/__init__.py index bfbd4d82e..f3b8c45e0 100644 --- a/pytential/linalg/__init__.py +++ b/pytential/linalg/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018 Andreas Kloeckner" __license__ = """ @@ -20,20 +23,30 @@ THE SOFTWARE. """ -from pytential.linalg.utils import ( - IndexList, TargetAndSourceClusterList, - make_index_list, make_index_cluster_cartesian_product, - interp_decomp, - ) from pytential.linalg.proxy import ( - ProxyClusterGeometryData, ProxyPointTarget, ProxyPointSource, - ProxyGeneratorBase, ProxyGenerator, QBXProxyGenerator, - partition_by_nodes, gather_cluster_neighbor_points, - ) + ProxyClusterGeometryData, + ProxyGenerator, + ProxyGeneratorBase, + ProxyPointSource, + ProxyPointTarget, + QBXProxyGenerator, + gather_cluster_neighbor_points, + partition_by_nodes, +) from pytential.linalg.skeletonization import ( - SkeletonizationWrangler, make_skeletonization_wrangler, - SkeletonizationResult, skeletonize_by_proxy, - ) + SkeletonizationResult, + SkeletonizationWrangler, + make_skeletonization_wrangler, + skeletonize_by_proxy, +) +from pytential.linalg.utils import ( + IndexList, + TargetAndSourceClusterList, + interp_decomp, + make_index_cluster_cartesian_product, + make_index_list, +) + __all__ = ( "IndexList", "TargetAndSourceClusterList", diff --git a/pytential/linalg/direct_solver_symbolic.py b/pytential/linalg/direct_solver_symbolic.py index 00f298fe2..c2e0c2afa 100644 --- a/pytential/linalg/direct_solver_symbolic.py +++ b/pytential/linalg/direct_solver_symbolic.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2022 Alexandru Fikl" __license__ = """ @@ -22,8 +25,8 @@ from pytools import obj_array -from pytential.symbolic.mappers import ( - IdentityMapper, OperatorCollector, LocationTagger) +from pytential.symbolic.mappers import IdentityMapper, LocationTagger, OperatorCollector + __doc__ = """ .. autoclass:: KernelTransformationRemover @@ -81,8 +84,9 @@ class KernelTransformationRemover(IdentityMapper): def __init__(self): from sumpy.kernel import ( - TargetTransformationRemover, - SourceTransformationRemover) + SourceTransformationRemover, + TargetTransformationRemover, + ) self.sxr = SourceTransformationRemover() self.txr = TargetTransformationRemover() diff --git a/pytential/linalg/gmres.py b/pytential/linalg/gmres.py index 4e94bbb66..cde91bf1f 100644 --- a/pytential/linalg/gmres.py +++ b/pytential/linalg/gmres.py @@ -1,5 +1,6 @@ from __future__ import annotations + __copyright__ = "Copyright (C) 2012-2013 Andreas Kloeckner" __license__ = """ @@ -45,13 +46,17 @@ See :class:`arraycontext.ArrayOrContainerT`. """ -from collections.abc import Callable, Sequence from dataclasses import dataclass from functools import partial +from typing import TYPE_CHECKING import numpy as np -from arraycontext import ArrayContainer, ArrayOrContainerT + +if TYPE_CHECKING: + from collections.abc import Callable, Sequence + + from arraycontext import ArrayContainer, ArrayOrContainerT def structured_vdot(x, y, array_context=None): @@ -323,8 +328,9 @@ def gmres( :return: a :class:`GMRESResult`. """ if inner_product is None: - from pytential.symbolic.execution import \ - _find_array_context_from_args_in_context + from pytential.symbolic.execution import ( + _find_array_context_from_args_in_context, + ) try: actx = _find_array_context_from_args_in_context({ "rhs": rhs, "x0": x0, diff --git a/pytential/linalg/proxy.py b/pytential/linalg/proxy.py index 122b27d71..4854869bd 100644 --- a/pytential/linalg/proxy.py +++ b/pytential/linalg/proxy.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018 Alexandru Fikl" __license__ = """ @@ -20,28 +23,32 @@ THE SOFTWARE. """ -from collections.abc import Callable from dataclasses import dataclass -from typing import Any, cast +from typing import TYPE_CHECKING, Any, cast import numpy as np import numpy.linalg as la +import loopy as lp from arraycontext import Array, ArrayContainer, PyOpenCLArrayContext, flatten +from loopy.version import MOST_RECENT_LANGUAGE_VERSION from meshmode.discretization import Discretization from meshmode.dof_array import DOFArray - -from numpy.typing import NDArray from pytools import memoize_in + from pytential import GeometryCollection, bind, sym -from pytential.symbolic.dof_desc import DOFDescriptorLike -from pytential.linalg.utils import IndexList +from pytential.qbx import QBXLayerPotentialSource from pytential.source import PointPotentialSource from pytential.target import PointsTarget -from pytential.qbx import QBXLayerPotentialSource -import loopy as lp -from loopy.version import MOST_RECENT_LANGUAGE_VERSION + +if TYPE_CHECKING: + from collections.abc import Callable + + from numpy.typing import NDArray + + from pytential.linalg.utils import IndexList + from pytential.symbolic.dof_desc import DOFDescriptorLike __doc__ = """ @@ -244,7 +251,7 @@ def discr(self): self.dofdesc.geometry, self.dofdesc.discr_stage) - def to_numpy(self, actx: PyOpenCLArrayContext) -> "ProxyClusterGeometryData": + def to_numpy(self, actx: PyOpenCLArrayContext) -> ProxyClusterGeometryData: if self._cluster_radii is not None: cluster_radii = actx.to_numpy(self._cluster_radii) else: @@ -633,11 +640,11 @@ def __call__(self, source_dd = self.places.auto_source source_dd = sym.as_dofdesc(source_dd) - radii = cast(ArrayContainer, bind(self.places, sym.expansion_radii( + radii = cast("ArrayContainer", bind(self.places, sym.expansion_radii( self.ambient_dim, dofdesc=source_dd))(actx)) - center_int = cast(ArrayContainer, bind(self.places, sym.expansion_centers( + center_int = cast("ArrayContainer", bind(self.places, sym.expansion_centers( self.ambient_dim, -1, dofdesc=source_dd))(actx)) - center_ext = cast(ArrayContainer, bind(self.places, sym.expansion_centers( + center_ext = cast("ArrayContainer", bind(self.places, sym.expansion_centers( self.ambient_dim, +1, dofdesc=source_dd))(actx)) return super().__call__(actx, source_dd, dof_index, diff --git a/pytential/linalg/skeletonization.py b/pytential/linalg/skeletonization.py index 365a44aa3..e23437f13 100644 --- a/pytential/linalg/skeletonization.py +++ b/pytential/linalg/skeletonization.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018-2022 Alexandru Fikl" __license__ = """ @@ -22,19 +25,25 @@ from collections.abc import Callable, Hashable, Sequence from dataclasses import dataclass -from typing import Any +from typing import TYPE_CHECKING, Any import numpy as np -from arraycontext import PyOpenCLArrayContext, Array - -from pytential import GeometryCollection, sym -from pytential.symbolic.matrix import ClusterMatrixBuilderBase -from pytential.linalg.utils import IndexList, TargetAndSourceClusterList -from pytential.linalg.proxy import ProxyGeneratorBase, ProxyClusterGeometryData from pytential.linalg.direct_solver_symbolic import ( - PROXY_SKELETONIZATION_TARGET, PROXY_SKELETONIZATION_SOURCE, - prepare_expr, prepare_proxy_expr) + PROXY_SKELETONIZATION_SOURCE, + PROXY_SKELETONIZATION_TARGET, + prepare_expr, + prepare_proxy_expr, +) +from pytential.linalg.utils import IndexList, TargetAndSourceClusterList + + +if TYPE_CHECKING: + from arraycontext import Array, PyOpenCLArrayContext + + from pytential import GeometryCollection, sym + from pytential.linalg.proxy import ProxyClusterGeometryData, ProxyGeneratorBase + from pytential.symbolic.matrix import ClusterMatrixBuilderBase __doc__ = """ @@ -107,7 +116,7 @@ def _approximate_geometry_waa_magnitude( actx: PyOpenCLArrayContext, places: GeometryCollection, - cluster_index: "IndexList", + cluster_index: IndexList, domain: sym.DOFDescriptor) -> Array: """ :arg cluster_index: a :class:`~pytential.linalg.IndexList` representing the @@ -120,6 +129,7 @@ def _approximate_geometry_waa_magnitude( this is a simple average. """ from pytools import memoize_in + from pytential import bind, sym @memoize_in(actx, (_approximate_geometry_waa_magnitude, "mean_over_cluster")) @@ -436,7 +446,9 @@ def make_skeletonization_wrangler( # {{{ builders from pytential.symbolic.matrix import ( - P2PClusterMatrixBuilder, QBXClusterMatrixBuilder) + P2PClusterMatrixBuilder, + QBXClusterMatrixBuilder, + ) neighbor_cluster_builder = _neighbor_cluster_builder if neighbor_cluster_builder is None: @@ -581,7 +593,7 @@ def _skeletonize_block_by_proxy_with_mats( id_rank: int | None = None, max_particles_in_box: int | None = None, rng: np.random.Generator | None = None, - ) -> "SkeletonizationResult": + ) -> SkeletonizationResult: nclusters = tgt_src_index.nclusters if nclusters == 1: raise ValueError("cannot make a proxy skeleton for a single cluster") diff --git a/pytential/linalg/utils.py b/pytential/linalg/utils.py index eca334568..dc4dce82c 100644 --- a/pytential/linalg/utils.py +++ b/pytential/linalg/utils.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018-2022 Alexandru Fikl" __license__ = """ @@ -21,15 +24,17 @@ """ from dataclasses import dataclass -from typing import Any, TYPE_CHECKING +from typing import TYPE_CHECKING, Any import numpy as np import numpy.linalg as la -from arraycontext import PyOpenCLArrayContext, Array from pytools import memoize_in, memoize_method + if TYPE_CHECKING: + from arraycontext import Array, PyOpenCLArrayContext + from pytential.linalg.skeletonization import SkeletonizationResult @@ -366,7 +371,7 @@ def interp_decomp( # {{{ cluster matrix errors def cluster_skeletonization_error( - mat: np.ndarray, skeleton: "SkeletonizationResult", *, + mat: np.ndarray, skeleton: SkeletonizationResult, *, ord: float | None = None, relative: bool = False) -> tuple[np.ndarray, np.ndarray]: r"""Evaluate the cluster-wise skeletonization errors for the given *skeleton*. @@ -402,7 +407,7 @@ def cluster_skeletonization_error( tgt_src_index = skeleton.tgt_src_index nclusters = skeleton.nclusters - def mnorm(x: np.ndarray, y: np.ndarray) -> "np.floating[Any]": + def mnorm(x: np.ndarray, y: np.ndarray) -> np.floating[Any]: result = la.norm(x - y, ord=ord) if relative: result = result / la.norm(x, ord=ord) @@ -440,9 +445,9 @@ def mnorm(x: np.ndarray, y: np.ndarray) -> "np.floating[Any]": def skeletonization_error( - mat: np.ndarray, skeleton: "SkeletonizationResult", *, + mat: np.ndarray, skeleton: SkeletonizationResult, *, ord: float | None = None, - relative: bool = False) -> "np.floating[Any]": + relative: bool = False) -> np.floating[Any]: r"""Computes the skeletonization error for the entire matrix *mat*. The error computed here is given by diff --git a/pytential/log.py b/pytential/log.py index 137514d68..2edf8ed17 100644 --- a/pytential/log.py +++ b/pytential/log.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2017 Matt Wala" __license__ = """ @@ -22,6 +25,7 @@ import logging + # # This file is based heavily on # https://stackoverflow.com/questions/384076/how-can-i-color-python-logging-output diff --git a/pytential/muller.py b/pytential/muller.py index 5e4068753..7578975fd 100644 --- a/pytential/muller.py +++ b/pytential/muller.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Shidong Jiang, Andreas Kloeckner" __license__ = """ @@ -20,11 +23,15 @@ THE SOFTWARE. """ -from collections.abc import Callable -from typing import TypeVar +from typing import TYPE_CHECKING, TypeVar import numpy as np + +if TYPE_CHECKING: + from collections.abc import Callable + + T = TypeVar("T", float, complex) diff --git a/pytential/qbx/__init__.py b/pytential/qbx/__init__.py index e00f02128..842c14919 100644 --- a/pytential/qbx/__init__.py +++ b/pytential/qbx/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" __license__ = """ @@ -20,22 +23,50 @@ THE SOFTWARE. """ -from collections.abc import Callable +import logging from functools import partial +from typing import TYPE_CHECKING, Literal, TypeAlias import numpy as np - -from arraycontext import PyOpenCLArrayContext, flatten, unflatten +from typing_extensions import override + +from arraycontext import ( + ArrayContext, + ArrayOrArithContainer, + PyOpenCLArrayContext, + flatten, + unflatten, +) from meshmode.discretization import Discretization from meshmode.dof_array import DOFArray -from pytools import memoize_method, memoize_in, single_valued -from sumpy.expansion import DefaultExpansionFactory as DefaultExpansionFactoryBase - -from pytential.qbx.cost import AbstractQBXCostModel +from pytools import memoize_in, memoize_method, obj_array, single_valued +from sumpy.expansion import ( + DefaultExpansionFactory as DefaultExpansionFactoryBase, + ExpansionFactoryBase, +) +from sumpy.expansion.local import LocalExpansionBase + +from pytential.qbx.fmm import QBXExpansionFactory from pytential.qbx.target_assoc import QBXTargetAssociationFailedError from pytential.source import LayerPotentialSourceBase -import logging + +if TYPE_CHECKING: + from collections.abc import Callable, Sequence + + from boxtree.tree_build import ExtentNorm, TreeKind + from pymbolic import ArithmeticExpression + from sumpy.kernel import Kernel + + from pytential.collection import GeometryCollection + from pytential.qbx.cost import AbstractQBXCostModel + from pytential.symbolic.compiler import ComputePotential + from pytential.symbolic.dof_desc import GeometryId + from pytential.symbolic.execution import BoundExpression + from pytential.symbolic.primitives import IntG, Operand, QBXForcedLimit + from pytential.target import TargetBase, TargetOrDiscretization + + logger = logging.getLogger(__name__) @@ -50,12 +81,16 @@ """ +FMMBackend: TypeAlias = Literal["sumpy"] | Literal["fmmlib"] + + # {{{ QBX layer potential source -class DefaultExpansionFactory(DefaultExpansionFactoryBase): - """A expansion factory to create QBX local, local and multipole expansions +class DefaultExpansionFactory(QBXExpansionFactory, DefaultExpansionFactoryBase): + """An expansion factory to create QBX local, local and multipole expansions """ - def get_qbx_local_expansion_class(self, kernel): + @override + def get_qbx_local_expansion_class(self, kernel: Kernel): local_expn_class = DefaultExpansionFactoryBase.get_local_expansion_class( self, kernel) from sumpy.expansion.m2l import NonFFTM2LTranslationClassFactory @@ -90,15 +125,41 @@ class QBXLayerPotentialSource(LayerPotentialSourceBase): # {{{ constructor / copy + density_discr: Discretization + fmm_level_to_order: Literal[False] | Callable[..., int] + + fine_order: int + qbx_order: int + fmm_backend: FMMBackend + + expansion_factory: QBXExpansionFactory + target_association_tolerance: float + + debug: bool + _disable_refinement: bool + _expansions_in_tree_have_extent: bool + _expansion_stick_out_factor: float + _well_sep_is_n_away: int + _max_leaf_refine_weight: int + _box_extent_norm: ExtentNorm + _from_sep_smaller_crit: int + _from_sep_smaller_min_nsources_cumul: int + _tree_kind: TreeKind + _use_target_specific_qbx: bool + + geometry_data_inspector: Callable[..., bool] | None + cost_model: AbstractQBXCostModel + def __init__( self, density_discr: Discretization, fine_order: int | None, qbx_order: int | None = None, fmm_order: bool | int | None = None, - fmm_level_to_order: bool | Callable[..., int] | None = None, - expansion_factory: DefaultExpansionFactoryBase | None = None, - target_association_tolerance: float | None = _not_provided, # type: ignore[assignment] + fmm_level_to_order: Literal[False] | Callable[..., int] | None = None, + expansion_factory: QBXExpansionFactory | None = None, + target_association_tolerance: ( + float | type[_not_provided] | None) = _not_provided, # begin experimental arguments # FIXME default debug=False once everything has matured @@ -107,7 +168,7 @@ def __init__( _expansions_in_tree_have_extent: bool = True, _expansion_stick_out_factor: float = 0.5, _max_leaf_refine_weight: int | None = None, - _box_extent_norm: str | None = None, + _box_extent_norm: ExtentNorm | None = None, _tree_kind: str = "adaptive", _well_sep_is_n_away: int = 2, _from_sep_smaller_crit: str | None = None, @@ -115,7 +176,7 @@ def __init__( _use_target_specific_qbx: bool | None = None, geometry_data_inspector: Callable[..., bool] | None = None, cost_model: AbstractQBXCostModel | None = None, - fmm_backend: str = "sumpy", + fmm_backend: FMMBackend = "sumpy", ) -> None: """ :arg fine_order: The total degree to which the (upsampled) @@ -268,7 +329,8 @@ def fmm_level_to_order(kernel, kernel_args, tree, level): self._max_leaf_refine_weight = max_leaf_refine_weight self._box_extent_norm = box_extent_norm self._from_sep_smaller_crit = from_sep_smaller_crit - self._from_sep_smaller_min_nsources_cumul = from_sep_smaller_min_nsources_cumul + self._from_sep_smaller_min_nsources_cumul = \ + from_sep_smaller_min_nsources_cumul self._tree_kind = _tree_kind self._use_target_specific_qbx = _use_target_specific_qbx @@ -376,8 +438,11 @@ def copy( # {{{ internal API @memoize_method - def qbx_fmm_geometry_data(self, places, name, - target_discrs_and_qbx_sides): + def qbx_fmm_geometry_data(self, + places: GeometryCollection, + name: GeometryId, + target_discrs_and_qbx_sides: Sequence[ + tuple[TargetOrDiscretization, QBXForcedLimit]]): """ :arg target_discrs_and_qbx_sides: a tuple of *(discr, qbx_forced_limit)* @@ -405,7 +470,8 @@ def qbx_fmm_geometry_data(self, places, name, # {{{ helpers for symbolic operator processing - def preprocess_optemplate(self, name, discretizations, expr): + @override + def preprocess_optemplate(self, name, discretizations, expr: ArithmeticExpression): """ :arg name: The symbolic name for *self*, which the preprocessor should use to find which expressions it is allowed to modify. @@ -413,7 +479,8 @@ def preprocess_optemplate(self, name, discretizations, expr): from pytential.symbolic.mappers import QBXPreprocessor return QBXPreprocessor(name, discretizations)(expr) - def op_group_features(self, expr): + @override + def op_group_features(self, expr: IntG): from pytential.utils import sort_arrays_together result = ( expr.source, @@ -426,8 +493,13 @@ def op_group_features(self, expr): # {{{ internal functionality for execution - def exec_compute_potential_insn(self, actx, insn, bound_expr, evaluate, - return_timing_data): + def exec_compute_potential_insn(self, + actx: ArrayContext, + insn: ComputePotential, + bound_expr: BoundExpression[Operand], + evaluate: Callable[[ArithmeticExpression], ArrayOrArithContainer], + return_timing_data: bool + ): extra_args = {} if self.fmm_level_to_order is False: @@ -485,7 +557,8 @@ def drive_cost_model( calibration_params ) - from pytools import obj_array + from functools import partial + return ( obj_array.vectorize( partial(wrangler.finalize_potentials, @@ -535,8 +608,7 @@ def _tree_indep_data_for_wrangler(self, source_kernels, target_kernels): qbx_local_factory = partial(qbx_local_expn_class, base_kernel) if self.fmm_backend == "sumpy": - from pytential.qbx.fmm import \ - QBXSumpyTreeIndependentDataForWrangler + from pytential.qbx.fmm import QBXSumpyTreeIndependentDataForWrangler return QBXSumpyTreeIndependentDataForWrangler( self.cl_context, fmm_mpole_factory, fmm_local_factory, qbx_local_factory, @@ -548,8 +620,7 @@ def _tree_indep_data_for_wrangler(self, source_kernels, target_kernels): target_kernel.replace_base_kernel(source_kernel) for target_kernel in target_kernels ] - from pytential.qbx.fmmlib import \ - QBXFMMLibTreeIndependentDataForWrangler + from pytential.qbx.fmmlib import QBXFMMLibTreeIndependentDataForWrangler return QBXFMMLibTreeIndependentDataForWrangler( self.cl_context, multipole_expansion_factory=fmm_mpole_factory, @@ -561,14 +632,17 @@ def _tree_indep_data_for_wrangler(self, source_kernels, target_kernels): else: raise ValueError(f"invalid FMM backend: {self.fmm_backend}") - def get_target_discrs_and_qbx_sides(self, insn, bound_expr): + def get_target_discrs_and_qbx_sides(self, + insn: ComputePotential, + bound_expr: BoundExpression[Operand] + ): """Build the list of unique target discretizations used by the provided instruction. """ # map (name, qbx_side) to number in list - target_name_and_side_to_number = {} + target_name_and_side_to_number: dict[GeometryId, tuple[int, int]] = {} # list of tuples (discr, qbx_side) - target_discrs_and_qbx_sides = [] + target_discrs_and_qbx_sides: list[tuple[TargetBase, int]] = [] for o in insn.outputs: key = (o.target_name, o.qbx_forced_limit) @@ -590,8 +664,12 @@ def get_target_discrs_and_qbx_sides(self, insn, bound_expr): return target_name_and_side_to_number, tuple(target_discrs_and_qbx_sides) - def exec_compute_potential_insn_fmm(self, actx: PyOpenCLArrayContext, - insn, bound_expr, evaluate, fmm_driver): + def exec_compute_potential_insn_fmm(self, + actx: PyOpenCLArrayContext, + insn: ComputePotential, + bound_expr: BoundExpression[Operand], + evaluate: Callable[[ArithmeticExpression], ArrayOrArithContainer], + fmm_driver): """ :arg fmm_driver: A function that accepts four arguments: *wrangler*, *strength*, *geo_data*, *kernel*, *kernel_arguments* @@ -734,8 +812,9 @@ def get_lpot_applier_on_tgt_subset(self, target_kernels, source_kernels): base_kernel = single_valued(knl.get_base_kernel() for knl in source_kernels) - from pytential.qbx.direct import LayerPotentialOnTargetAndCenterSubset from sumpy.expansion.local import VolumeTaylorLocalExpansion + + from pytential.qbx.direct import LayerPotentialOnTargetAndCenterSubset return LayerPotentialOnTargetAndCenterSubset( self.cl_context, expansion=VolumeTaylorLocalExpansion(base_kernel, self.qbx_order), @@ -761,12 +840,14 @@ def get_qbx_target_numberer(self, dtype): def exec_compute_potential_insn_direct(self, actx, insn, bound_expr, evaluate, return_timing_data): - from pytential import bind, sym from meshmode.discretization import Discretization + from pytential import bind, sym + if return_timing_data: - from pytential.source import UnableToCollectTimingData from warnings import warn + + from pytential.source import UnableToCollectTimingData warn( "Timing data collection not supported.", category=UnableToCollectTimingData, @@ -981,9 +1062,12 @@ def get_flat_strengths_from_densities( # }}} -__all__ = ( +__all__ = [ "QBXLayerPotentialSource", "QBXTargetAssociationFailedError", - ) + "QBXExpansionFactory", + "ExpansionFactoryBase", + "LocalExpansionBase", + ] # vim: fdm=marker diff --git a/pytential/qbx/cost.py b/pytential/qbx/cost.py index 752e17b1b..62ed38dde 100644 --- a/pytential/qbx/cost.py +++ b/pytential/qbx/cost.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2013 Andreas Kloeckner Copyright (C) 2018 Matt Wala @@ -24,26 +27,32 @@ THE SOFTWARE. """ +from abc import abstractmethod +from functools import partial + import numpy as np +from mako.template import Template + import pyopencl as cl import pyopencl.array +from boxtree.cost import ( + AbstractFMMCostModel as BaseAbstractFMMCostModel, + FMMCostModel, + FMMTranslationCostModel, + _PythonFMMCostModel, +) +from pymbolic import evaluate, var from pyopencl.array import take from pyopencl.elementwise import ElementwiseKernel from pyopencl.tools import dtype_to_ctype -from mako.template import Template -from pymbolic import var, evaluate from pytools import memoize_method -from functools import partial -from boxtree.cost import ( - FMMTranslationCostModel, AbstractFMMCostModel as BaseAbstractFMMCostModel, - FMMCostModel, _PythonFMMCostModel -) -from abc import abstractmethod Template = partial(Template, strict_undefined=True) import logging + + logger = logging.getLogger(__name__) @@ -924,8 +933,8 @@ def qbx_cost_per_box(self, queue, geo_data, kernel, kernel_arguments, calibration_params): """This function transfers *geo_data* to host if necessary """ - from pytential.qbx.utils import ToHostTransferredGeoDataWrapper from pytential.qbx.geometry import QBXFMMGeometryData + from pytential.qbx.utils import ToHostTransferredGeoDataWrapper if not isinstance(geo_data, ToHostTransferredGeoDataWrapper): assert isinstance(geo_data, QBXFMMGeometryData) @@ -939,8 +948,8 @@ def qbx_cost_per_stage(self, queue, geo_data, kernel, kernel_arguments, calibration_params): """This function additionally transfers geo_data to host if necessary """ - from pytential.qbx.utils import ToHostTransferredGeoDataWrapper from pytential.qbx.geometry import QBXFMMGeometryData + from pytential.qbx.utils import ToHostTransferredGeoDataWrapper if not isinstance(geo_data, ToHostTransferredGeoDataWrapper): assert isinstance(geo_data, QBXFMMGeometryData) diff --git a/pytential/qbx/direct.py b/pytential/qbx/direct.py index cbfbd833f..78e26375f 100644 --- a/pytential/qbx/direct.py +++ b/pytential/qbx/direct.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2016 Andreas Kloeckner" __license__ = """ @@ -20,11 +23,12 @@ THE SOFTWARE. """ -import loopy as lp import numpy as np +import loopy as lp from loopy.version import MOST_RECENT_LANGUAGE_VERSION from sumpy.qbx import LayerPotentialBase + from pytential.version import PYTENTIAL_KERNEL_VERSION diff --git a/pytential/qbx/fmm.py b/pytential/qbx/fmm.py index c3b158711..258aecba8 100644 --- a/pytential/qbx/fmm.py +++ b/pytential/qbx/fmm.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" __license__ = """ @@ -20,18 +23,32 @@ THE SOFTWARE. """ -import pyopencl as cl -import pyopencl.array -from sumpy.fmm import (SumpyTreeIndependentDataForWrangler, - SumpyExpansionWrangler, SumpyTimingFuture) +import logging +from abc import ABC, abstractmethod +from typing import TYPE_CHECKING -from pytools import memoize_method -from pytential.qbx.interactions import P2QBXLFromCSR, M2QBXL, L2QBXL, QBXL2P +from typing_extensions import override +import pyopencl.array as cl_array from boxtree.timing import TimingRecorder -from pytools import log_process, ProcessLogger +from pytools import ProcessLogger, log_process, memoize_method, obj_array +from sumpy.expansion import ExpansionFactoryBase +from sumpy.fmm import ( + SumpyExpansionWrangler, + SumpyTimingFuture, + SumpyTreeIndependentDataForWrangler, +) + +from pytential.qbx.interactions import L2QBXL, M2QBXL, QBXL2P, P2QBXLFromCSR + + +if TYPE_CHECKING: + from collections.abc import Callable + + from sumpy.expansion import LocalExpansionBase + from sumpy.kernel import Kernel + -import logging logger = logging.getLogger(__name__) @@ -44,17 +61,29 @@ """ +class QBXExpansionFactory(ExpansionFactoryBase, ABC): + @abstractmethod + def get_qbx_local_expansion_class(self, + kernel: Kernel + ) -> Callable[[Kernel, int], LocalExpansionBase]: ... + + # {{{ sumpy expansion wrangler class QBXSumpyTreeIndependentDataForWrangler(SumpyTreeIndependentDataForWrangler): - def __init__(self, cl_context, - multipole_expansion_factory, local_expansion_factory, - qbx_local_expansion_factory, target_kernels, source_kernels): + def __init__(self, + cl_context, + multipole_expansion_factory, + local_expansion_factory, + qbx_local_expansion_factory, + target_kernels, + source_kernels): super().__init__( cl_context, multipole_expansion_factory, local_expansion_factory, target_kernels=target_kernels, source_kernels=source_kernels) - self.qbx_local_expansion_factory = qbx_local_expansion_factory + self.qbx_local_expansion_factory: QBXExpansionFactory = ( + qbx_local_expansion_factory) @memoize_method def qbx_local_expansion(self, order): @@ -135,7 +164,8 @@ def __init__(self, tree_indep, geo_data, dtype, # {{{ data vector utilities - def output_zeros(self, template_ary): + @override + def output_zeros(self, template_ary: cl_array.Array): """This ought to be called ``non_qbx_output_zeros``, but since it has to override the superclass's behavior to integrate seamlessly, it needs to be called just :meth:`output_zeros`. @@ -143,9 +173,8 @@ def output_zeros(self, template_ary): nqbtl = self.geo_data.non_qbx_box_target_lists() - from pytools import obj_array return obj_array.new_1d([ - cl.array.zeros( + cl_array.zeros( template_ary.queue, nqbtl.nfiltered_targets, dtype=self.dtype) @@ -160,7 +189,7 @@ def qbx_local_expansion_zeros(self, template_ary): order = self.qbx_order qbx_l_expn = self.tree_indep.qbx_local_expansion(order) - return cl.array.zeros( + return cl_array.zeros( template_ary.queue, (self.geo_data.ncenters, len(qbx_l_expn)), diff --git a/pytential/qbx/fmmlib.py b/pytential/qbx/fmmlib.py index 8aec423a4..bd7bd0a02 100644 --- a/pytential/qbx/fmmlib.py +++ b/pytential/qbx/fmmlib.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2017 Andreas Kloeckner" __license__ = """ @@ -20,26 +23,29 @@ THE SOFTWARE. """ +import logging + import numpy as np -from pytools import memoize_method import pyopencl as cl import pyopencl.array - from boxtree.pyfmmlib_integration import ( - Kernel, - FMMLibTreeIndependentDataForWrangler, - FMMLibExpansionWrangler) + FMMLibExpansionWrangler, + FMMLibTreeIndependentDataForWrangler, + Kernel, +) +from boxtree.timing import return_timing_data +from pytools import log_process, memoize_method from sumpy.kernel import ( - LaplaceKernel, HelmholtzKernel, AxisTargetDerivative, - DirectionalSourceDerivative) + AxisTargetDerivative, + DirectionalSourceDerivative, + HelmholtzKernel, + LaplaceKernel, +) + import pytential.qbx.target_specific as ts -from boxtree.timing import return_timing_data -from pytools import log_process - -import logging logger = logging.getLogger(__name__) diff --git a/pytential/qbx/geometry.py b/pytential/qbx/geometry.py index 436fe856d..087e5d5db 100644 --- a/pytential/qbx/geometry.py +++ b/pytential/qbx/geometry.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" __license__ = """ @@ -21,22 +24,33 @@ """ +import logging +from typing import TYPE_CHECKING, cast + import numpy as np +from cgen import Enum -from pytools import memoize_method, memoize_in, log_process +import loopy as lp from arraycontext import PyOpenCLArrayContext, flatten -from meshmode.dof_array import DOFArray - -from boxtree.tools import DeviceDataRecord from boxtree.pyfmmlib_integration import FMMLibRotationDataInterface - -from cgen import Enum -import loopy as lp +from boxtree.tools import DeviceDataRecord from loopy.version import MOST_RECENT_LANGUAGE_VERSION +from meshmode.dof_array import DOFArray +from pytools import log_process, memoize_in, memoize_method from pytential.qbx.utils import TreeCodeContainerMixin -import logging + +if TYPE_CHECKING: + from collections.abc import Sequence + + from pytential.collection import GeometryCollection + from pytential.qbx import QBXLayerPotentialSource + from pytential.symbolic.dof_desc import DOFDescriptor + from pytential.symbolic.primitives import QBXForcedLimit + from pytential.target import TargetOrDiscretization + + logger = logging.getLogger(__name__) @@ -343,9 +357,8 @@ class QBXFMMGeometryData(FMMLibRotationDataInterface): Symbolic name for the :class:`~pytential.qbx.QBXLayerPotentialSource` in the collection :attr:`places`. - .. attribute:: code_getter + .. autoattribute:: code_getter - The :class:`QBXFMMGeometryDataCodeContainer` for this object. .. attribute:: target_discrs_and_qbx_sides @@ -385,11 +398,13 @@ class QBXFMMGeometryData(FMMLibRotationDataInterface): .. method:: m2l_rotation_angles() """ - def __init__(self, places, source_dd, - code_getter, - target_discrs_and_qbx_sides, - target_association_tolerance, - tree_kind, debug=None): + def __init__(self, places: GeometryCollection, source_dd: DOFDescriptor, + code_getter: QBXFMMGeometryDataCodeContainer, + target_discrs_and_qbx_sides: Sequence[ + tuple[TargetOrDiscretization, QBXForcedLimit]], + target_association_tolerance: float, + tree_kind, + debug: bool | None = None): """ .. rubric:: Constructor arguments @@ -402,15 +417,17 @@ def __init__(self, places, source_dd, potentially costly self-checks """ from pytential import sym - self.places = places - self.source_dd = sym.as_dofdesc(source_dd) - self.lpot_source = places.get_geometry(self.source_dd.geometry) - - self.code_getter = code_getter - self.target_discrs_and_qbx_sides = target_discrs_and_qbx_sides - self.target_association_tolerance = target_association_tolerance + self.places: GeometryCollection = places + self.source_dd: DOFDescriptor = sym.as_dofdesc(source_dd) + self.lpot_source: QBXLayerPotentialSource = cast("QBXLayerPotentialSource", + places.get_geometry(self.source_dd.geometry)) + + self.code_getter: QBXFMMGeometryDataCodeContainer = code_getter + self.target_discrs_and_qbx_sides: Sequence[ + tuple[TargetOrDiscretization, QBXForcedLimit]] = target_discrs_and_qbx_sides + self.target_association_tolerance: float = target_association_tolerance self.tree_kind = tree_kind - self.debug = self.lpot_source.debug if debug is None else debug + self.debug: bool = self.lpot_source.debug if debug is None else debug @property def ambient_dim(self): @@ -897,8 +914,9 @@ def plot(self, draw_circles=False, draw_center_numbers=False, This only works for two-dimensional geometries. """ - from pytential import sym import matplotlib.pyplot as pt + + from pytential import sym pt.clf() dims = self.tree().targets.shape[0] diff --git a/pytential/qbx/interactions.py b/pytential/qbx/interactions.py index f10c78c6d..3818b8ce2 100644 --- a/pytential/qbx/interactions.py +++ b/pytential/qbx/interactions.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" __license__ = """ @@ -21,13 +24,13 @@ """ import numpy as np + import loopy as lp from loopy.version import MOST_RECENT_LANGUAGE_VERSION from pytools import memoize_method - -from sumpy.p2e import P2EBase from sumpy.e2e import E2EBase from sumpy.e2p import E2PBase +from sumpy.p2e import P2EBase from pytential.version import PYTENTIAL_KERNEL_VERSION diff --git a/pytential/qbx/refinement.py b/pytential/qbx/refinement.py index bb5cde1b7..867a0c0cc 100644 --- a/pytential/qbx/refinement.py +++ b/pytential/qbx/refinement.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2013 Andreas Kloeckner Copyright (C) 2016, 2017 Matt Wala @@ -23,24 +26,26 @@ THE SOFTWARE. """ +import logging + import numpy as np import loopy as lp -from loopy.version import MOST_RECENT_LANGUAGE_VERSION - from arraycontext import PyOpenCLArrayContext, flatten -from meshmode.dof_array import DOFArray - -from pytools import memoize_method, memoize_in from boxtree.area_query import AreaQueryElementwiseTemplate from boxtree.tools import InlineBinarySearch +from loopy.version import MOST_RECENT_LANGUAGE_VERSION +from meshmode.dof_array import DOFArray +from pytools import ProcessLogger, log_process, memoize_in, memoize_method + from pytential.qbx.utils import ( - QBX_TREE_C_PREAMBLE, QBX_TREE_MAKO_DEFS, TreeWranglerBase, - TreeCodeContainerMixin) + QBX_TREE_C_PREAMBLE, + QBX_TREE_MAKO_DEFS, + TreeCodeContainerMixin, + TreeWranglerBase, +) -from pytools import ProcessLogger, log_process -import logging logger = logging.getLogger(__name__) @@ -549,7 +554,7 @@ def _visualize_refinement(actx: PyOpenCLArrayContext, discr, ] if 0: - from pytential import sym, bind + from pytential import bind, sym bdry_normals = bind(discr, sym.normal(discr.ambient_dim))( actx).as_vector(dtype=object) vis_data.append(("bdry_normals", bdry_normals),) @@ -568,8 +573,7 @@ def _make_quad_stage2_discr(lpot_source, stage2_density_discr): def _make_temporary_collection(lpot_source, stage1_density_discr=None, stage2_density_discr=None): - from pytential import sym - from pytential import GeometryCollection + from pytential import GeometryCollection, sym name = "_tmp_refine_source" places = GeometryCollection(lpot_source, auto_where=name) @@ -598,8 +602,7 @@ def _refine_qbx_stage1(lpot_source, density_discr, maxiter=None, debug=None, visualize=False): from pytential import bind, sym if lpot_source._disable_refinement: - from meshmode.discretization.connection import \ - IdentityDiscretizationConnection + from meshmode.discretization.connection import IdentityDiscretizationConnection return density_discr, IdentityDiscretizationConnection(density_discr) from meshmode.mesh.refinement import RefinerWithoutAdjacency @@ -720,8 +723,7 @@ def _refine_qbx_stage2(lpot_source, stage1_density_discr, force_stage2_uniform_refinement_rounds=None, maxiter=None, debug=None, visualize=False): if lpot_source._disable_refinement: - from meshmode.discretization.connection import \ - IdentityDiscretizationConnection + from meshmode.discretization.connection import IdentityDiscretizationConnection return (stage1_density_discr, IdentityDiscretizationConnection(stage1_density_discr)) diff --git a/pytential/qbx/target_assoc.py b/pytential/qbx/target_assoc.py index 5540441cc..38d191193 100644 --- a/pytential/qbx/target_assoc.py +++ b/pytential/qbx/target_assoc.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2016 Matt Wala """ @@ -23,25 +26,36 @@ """ import numpy as np +from cgen import Enum -from pytools import memoize_method, memoize_in -from boxtree.tools import DeviceDataRecord +from arraycontext import Array, PyOpenCLArrayContext, flatten from boxtree.area_query import AreaQueryElementwiseTemplate -from boxtree.tools import InlineBinarySearch - -from cgen import Enum +from boxtree.tools import DeviceDataRecord, InlineBinarySearch +from pytools import memoize_in, memoize_method -from arraycontext import PyOpenCLArrayContext, flatten from pytential.qbx.utils import ( - QBX_TREE_C_PREAMBLE, QBX_TREE_MAKO_DEFS, TreeWranglerBase, - TreeCodeContainerMixin) + QBX_TREE_C_PREAMBLE, + QBX_TREE_MAKO_DEFS, + TreeCodeContainerMixin, + TreeWithQBXMetadata, + TreeWranglerBase, +) unwrap_args = AreaQueryElementwiseTemplate.unwrap_args +import logging +from typing import TYPE_CHECKING + from pytools import log_process -import logging + +if TYPE_CHECKING: + from pyopencl import WaitList + + from pytential.collection import GeometryCollection + + logger = logging.getLogger(__name__) __doc__ = """ @@ -513,9 +527,14 @@ def make_container(): class TargetAssociationWrangler(TreeWranglerBase): @log_process(logger) - def mark_targets(self, places, dofdesc, - tree, peer_lists, target_status, - debug, wait_for=None): + def mark_targets(self, + places: GeometryCollection, + dofdesc, + tree: TreeWithQBXMetadata, + peer_lists, + target_status: Array, + debug, + wait_for=None): from pytential import bind, sym ambient_dim = places.ambient_dim actx = self.array_context @@ -817,9 +836,15 @@ def make_default_target_association(self, ntargets): return QBXTargetAssociation(target_to_center=target_to_center) -def associate_targets_to_qbx_centers(places, geometry, wrangler, - target_discrs_and_qbx_sides, target_association_tolerance, - debug=True, wait_for=None): +def associate_targets_to_qbx_centers( + places: GeometryCollection, + geometry, + wrangler: TargetAssociationWrangler, + target_discrs_and_qbx_sides, + target_association_tolerance, + debug: bool = True, + wait_for: WaitList = None, + ): """ Associate targets to centers in a layer potential source. diff --git a/pytential/qbx/target_specific/__init__.py b/pytential/qbx/target_specific/__init__.py index e6f10bba8..bc020cabb 100644 --- a/pytential/qbx/target_specific/__init__.py +++ b/pytential/qbx/target_specific/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018 Matt Wala" __license__ = """ diff --git a/pytential/qbx/utils.py b/pytential/qbx/utils.py index 5338cd1d6..228496732 100644 --- a/pytential/qbx/utils.py +++ b/pytential/qbx/utils.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2016 Matt Wala """ @@ -22,17 +25,22 @@ THE SOFTWARE. """ -from typing import cast +import logging +from typing import TYPE_CHECKING, cast + import numpy as np -from pytools import memoize_method, memoize_in, log_process -from arraycontext import PyOpenCLArrayContext +from boxtree.pyfmmlib_integration import FMMLibRotationDataInterface +from boxtree.tree import Tree from meshmode.dof_array import DOFArray +from pytools import log_process, memoize_in, memoize_method -from boxtree.tree import Tree -from boxtree.pyfmmlib_integration import FMMLibRotationDataInterface -import logging +if TYPE_CHECKING: + import pyopencl.array as cl_array + from arraycontext import PyOpenCLArrayContext + + from pytential.collection import GeometryCollection logger = logging.getLogger(__name__) @@ -244,10 +252,15 @@ class TreeWithQBXMetadata(Tree): @log_process(logger) -def build_tree_with_qbx_metadata(actx: PyOpenCLArrayContext, - places, tree_builder, particle_list_filter, - sources_list=(), targets_list=(), - use_stage2_discr=False): +def build_tree_with_qbx_metadata( + actx: PyOpenCLArrayContext, + places: GeometryCollection, + tree_builder, + particle_list_filter, + sources_list=(), + targets_list=(), + use_stage2_discr: bool = False + ) -> TreeWithQBXMetadata: """Return a :class:`TreeWithQBXMetadata` built from the given layer potential source. This contains particles of four different types: @@ -328,7 +341,6 @@ def _make_centers(discr): # Build tree with sources and centers. Split boxes # only because of sources. - import pyopencl.array as cl_array refine_weights = cast("cl_array.Array", actx.np.zeros(nparticles, np.int32)) refine_weights[:nsources].fill(1) diff --git a/pytential/solve.py b/pytential/solve.py index 03ff80be2..146815a12 100644 --- a/pytential/solve.py +++ b/pytential/solve.py @@ -1,6 +1,10 @@ -from pytential.linalg.gmres import * # noqa: F403 +from __future__ import annotations from warnings import warn + +from pytential.linalg.gmres import * # noqa: F403 + + warn( "pytential.solve is deprecated and will be removed in 2023. Use " "pytential.linalg.gmres instead.", DeprecationWarning, diff --git a/pytential/source.py b/pytential/source.py index fdd141cee..c6e072941 100644 --- a/pytential/source.py +++ b/pytential/source.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2017 Andreas Kloeckner" __license__ = """ @@ -20,21 +23,25 @@ THE SOFTWARE. """ -from collections.abc import Hashable from abc import ABC, abstractmethod -from typing import TYPE_CHECKING +from typing import TYPE_CHECKING, cast import numpy as np + from arraycontext import PyOpenCLArrayContext, flatten, unflatten from meshmode.dof_array import DOFArray from pytools import T, memoize_in from sumpy.fmm import UnableToCollectTimingData -from sumpy.kernel import Kernel -from sumpy.p2p import P2P, P2PBase -from pytential import sym if TYPE_CHECKING: + from collections.abc import Hashable + + from meshmode.discretization import Discretization + from sumpy.kernel import Kernel + from sumpy.p2p import P2P, P2PBase + + from pytential import sym from pytential.collection import GeometryCollection __doc__ = """ @@ -97,7 +104,7 @@ def get_p2p(self, def preprocess_optemplate(self, name: str, - discretizations: "GeometryCollection", + discretizations: GeometryCollection, expr: T) -> T: """ :returns: a processed *expr*, where each @@ -274,7 +281,7 @@ def _entry_dtype(actx, ary): raise TypeError(f"unexpected type: '{type(ary).__name__}'") -class LayerPotentialSourceBase(_SumpyP2PMixin, PotentialSource): +class LayerPotentialSourceBase(_SumpyP2PMixin, PotentialSource, ABC): """A discretization of a layer potential using element-based geometry, with support for refinement and upsampling. @@ -283,8 +290,8 @@ class LayerPotentialSourceBase(_SumpyP2PMixin, PotentialSource): .. attribute:: density_discr """ - def __init__(self, density_discr): - self.density_discr = density_discr + def __init__(self, density_discr: Discretization): + self.density_discr: Discretization = density_discr @property def _setup_actx(self): @@ -292,7 +299,7 @@ def _setup_actx(self): @property def cl_context(self): - return self._setup_actx.context + return cast("PyOpenCLArrayContext", self._setup_actx).context @property def ambient_dim(self): @@ -356,8 +363,8 @@ def flatten_and_reorder_sources(source_array): kernel_extra_kwargs = {} source_extra_kwargs = {} - from sumpy.tools import gather_arguments, gather_source_arguments from arraycontext import rec_map_array_container + from sumpy.tools import gather_arguments, gather_source_arguments for func, var_dict in [ (gather_arguments, kernel_extra_kwargs), diff --git a/pytential/symbolic/__init__.py b/pytential/symbolic/__init__.py index bee8abf4e..22cc41c1c 100644 --- a/pytential/symbolic/__init__.py +++ b/pytential/symbolic/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" __license__ = """ diff --git a/pytential/symbolic/compiler.py b/pytential/symbolic/compiler.py index 5e9d91b5f..6de9879d3 100644 --- a/pytential/symbolic/compiler.py +++ b/pytential/symbolic/compiler.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2010-2013 Andreas Kloeckner" __license__ = """ @@ -20,20 +23,23 @@ THE SOFTWARE. """ -from collections.abc import Collection, Iterator, Hashable, Sequence, Set from dataclasses import dataclass from functools import reduce -from typing import Any +from typing import TYPE_CHECKING, Any import numpy as np -from pymbolic.primitives import cse_scope, Variable, Subscript -from pymbolic.typing import Expression -from sumpy.kernel import Kernel +from pymbolic.primitives import Subscript, Variable, cse_scope -from pytential.symbolic.primitives import ( - DOFDescriptor, IntG, NamedIntermediateResult) from pytential.symbolic.mappers import CachedIdentityMapper, DependencyMapper +from pytential.symbolic.primitives import DOFDescriptor, IntG, NamedIntermediateResult + + +if TYPE_CHECKING: + from collections.abc import Collection, Hashable, Iterator, Sequence, Set + + from pymbolic.typing import Expression + from sumpy.kernel import Kernel # {{{ statements @@ -272,7 +278,7 @@ def __hash__(self): def dot_dataflow_graph( dep_mapper: DependencyMapper, - code: "Code", + code: Code, max_node_label_length: int = 30, label_wrap_width: int = 50) -> str: origins = {} diff --git a/pytential/symbolic/dof_connection.py b/pytential/symbolic/dof_connection.py index 5aaf9bfb0..e488f53b7 100644 --- a/pytential/symbolic/dof_connection.py +++ b/pytential/symbolic/dof_connection.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2016 Matt Wala Copyright (C) 2019 Alexandru Fikl @@ -24,10 +27,10 @@ """ import numpy as np # noqa: F401 -import loopy as lp -from pytools import memoize_in +import loopy as lp from meshmode.dof_array import DOFArray +from pytools import memoize_in __doc__ = """ @@ -107,7 +110,9 @@ def prg(): name="interleave") from meshmode.transform_metadata import ( - ConcurrentElementInameTag, ConcurrentDOFInameTag) + ConcurrentDOFInameTag, + ConcurrentElementInameTag, + ) return lp.tag_inames(t_unit, { "iel": ConcurrentElementInameTag(), "idof": ConcurrentDOFInameTag()}) @@ -288,8 +293,7 @@ def connection_from_dds(places, from_dd, to_dd): if from_dd.granularity is not to_dd.granularity: conn = DOFConnection(connections, from_dd=from_dd, to_dd=to_dd) else: - from meshmode.discretization.connection import \ - ChainedDiscretizationConnection + from meshmode.discretization.connection import ChainedDiscretizationConnection conn = ChainedDiscretizationConnection(connections, from_discr=from_discr) diff --git a/pytential/symbolic/dof_desc.py b/pytential/symbolic/dof_desc.py index 044eeb685..24dd97350 100644 --- a/pytential/symbolic/dof_desc.py +++ b/pytential/symbolic/dof_desc.py @@ -1,5 +1,6 @@ from __future__ import annotations + __copyright__ = "Copyright (C) 2010-2013 Andreas Kloeckner" __license__ = """ @@ -23,7 +24,8 @@ """ from collections.abc import Hashable -from typing import Any +from typing import Any, TypeAlias + __doc__ = """ .. autoclass:: DEFAULT_SOURCE @@ -118,6 +120,9 @@ class GRANULARITY_ELEMENT: # noqa: N801 # }}} +GeometryId: TypeAlias = Hashable + + # {{{ DOFDescriptor class _NoArgSentinel: @@ -162,9 +167,9 @@ class DOFDescriptor: """ def __init__(self, - geometry: Hashable | None = None, - discr_stage: DiscretizationStages | None = None, - granularity: DOFGranularities | None = None): + geometry: GeometryId | None = None, + discr_stage: DiscretizationStage | None = None, + granularity: DOFGranularity | None = None): if granularity is None: granularity = GRANULARITY_NODE @@ -184,9 +189,9 @@ def __init__(self, self.granularity = granularity def copy(self, - geometry: Hashable | None = None, - discr_stage: DiscretizationStages | None = _NoArgSentinel, # type: ignore[assignment] - granularity: DOFGranularities | None = None) -> DOFDescriptor: + geometry: GeometryId | None = None, + discr_stage: DiscretizationStage | None = _NoArgSentinel, # type: ignore[assignment] + granularity: DOFGranularity | None = None) -> DOFDescriptor: if isinstance(geometry, DOFDescriptor): discr_stage = geometry.discr_stage \ if discr_stage is _NoArgSentinel else discr_stage @@ -277,18 +282,18 @@ def as_dofdesc(desc: DOFDescriptorLike) -> DOFDescriptor: DEFAULT_DOFDESC = DOFDescriptor() -DiscretizationStages = ( +DiscretizationStage = ( type[QBX_SOURCE_STAGE1] | type[QBX_SOURCE_STAGE2] | type[QBX_SOURCE_QUAD_STAGE2] ) -DOFGranularities = ( +DOFGranularity = ( type[GRANULARITY_NODE] | type[GRANULARITY_CENTER] | type[GRANULARITY_ELEMENT] ) -DOFDescriptorLike = DOFDescriptor | Hashable +DOFDescriptorLike = DOFDescriptor | GeometryId # }}} diff --git a/pytential/symbolic/execution.py b/pytential/symbolic/execution.py index 3859023af..09732be73 100644 --- a/pytential/symbolic/execution.py +++ b/pytential/symbolic/execution.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2013 Andreas Kloeckner Copyright (C) 2018 Alexandru Fikl @@ -23,27 +26,51 @@ THE SOFTWARE. """ -from collections.abc import Hashable, Sequence -from typing import Any +import logging +from typing import TYPE_CHECKING, Any, Generic, overload -from pymbolic.mapper.evaluator import ( - EvaluationMapper as PymbolicEvaluationMapper) import numpy as np - -from arraycontext import PyOpenCLArrayContext +from typing_extensions import override + +from arraycontext import ( + ArrayContext, + ArrayOrContainerOrScalar, + PyOpenCLArrayContext, + ScalarLike, +) from meshmode.dof_array import DOFArray - +from pymbolic.mapper.evaluator import EvaluationMapper as PymbolicEvaluationMapper from pytools import memoize_in, memoize_method -from pytential.qbx.cost import AbstractQBXCostModel -from pytential.symbolic.compiler import Code, Statement, Assign, ComputePotential from pytential import sym -from pytential.collection import AutoWhereLike, GeometryCollection +from pytential.qbx.cost import AbstractQBXCostModel +from pytential.symbolic.compiler import Assign, Code, ComputePotential, Statement from pytential.symbolic.dof_desc import ( - DOFDescriptor, DOFDescriptorLike, - _UNNAMED_SOURCE, _UNNAMED_TARGET) + _UNNAMED_SOURCE, + _UNNAMED_TARGET, + DOFDescriptor, + DOFDescriptorLike, +) +from pytential.symbolic.primitives import OperandTc + + +if TYPE_CHECKING: + from collections.abc import Hashable, Mapping, Sequence + + import pymbolic.primitives as p + from pymbolic import ArithmeticExpression + from pymbolic.geometric_algebra import MultiVector + from pytools.obj_array import ObjectArrayND + + from pytential.collection import AutoWhereLike, GeometryCollection, GeometryLike + from pytential.symbolic.primitives import ( + NodeMax, + NodeMin, + NodeSum, + SingleScalarOperandExpressionWithWhere, + ) + -import logging logger = logging.getLogger(__name__) @@ -68,7 +95,7 @@ class EvaluationMapperBoundOpCacheKey: # {{{ evaluation mapper base (shared, between actual eval and cost model) -class EvaluationMapperBase(PymbolicEvaluationMapper): +class EvaluationMapperBase(PymbolicEvaluationMapper[ArrayOrContainerOrScalar]): def __init__(self, bound_expr, actx: PyOpenCLArrayContext, context=None, target_geometry=None, target_points=None, target_normals=None, target_tangents=None): @@ -97,37 +124,42 @@ def _map_minmax(self, func, inherited_func, expr): else: return inherited_func(expr) - def map_max(self, expr): + @override + def map_max(self, expr: p.Max): return self._map_minmax( self.array_context.np.maximum, super().map_max, expr) + @override def map_min(self, expr): return self._map_minmax( self.array_context.np.minimum, super().map_min, expr) - def map_node_sum(self, expr): + def map_node_sum(self, expr: NodeSum): operand = self.rec(expr.operand) assert isinstance(operand, (*self.array_context.array_types, DOFArray)) return self.array_context.np.sum(operand) - def map_node_max(self, expr): + def map_node_max(self, expr: NodeMax): operand = self.rec(expr.operand) assert isinstance(operand, (*self.array_context.array_types, DOFArray)) return self.array_context.np.max(operand) - def map_node_min(self, expr): + def map_node_min(self, expr: NodeMin): operand = self.rec(expr.operand) assert isinstance(operand, (*self.array_context.array_types, DOFArray)) return self.array_context.np.min(operand) - def _map_elementwise_reduction(self, reduction_name, expr): + def _map_elementwise_reduction(self, + reduction_name: str, + expr: SingleScalarOperandExpressionWithWhere + ): import loopy as lp from arraycontext import make_loopy_program from meshmode.transform_metadata import ConcurrentElementInameTag @@ -597,8 +629,7 @@ def _prepare_expr(places, expr, auto_where=None): """ from pytential.source import LayerPotentialSourceBase - from pytential.symbolic.mappers import ( - ToTargetTagger, DerivativeBinder, flatten) + from pytential.symbolic.mappers import DerivativeBinder, ToTargetTagger, flatten expr = flatten(expr) auto_source, auto_target = _prepare_auto_where(auto_where, places=places) @@ -702,7 +733,7 @@ def look_for_array_contexts(ary): return array_context -class BoundExpression: +class BoundExpression(Generic[OperandTc]): """An expression readied for evaluation by binding it to a :class:`~pytential.collection.GeometryCollection`. @@ -717,9 +748,9 @@ class BoundExpression: """ def __init__(self, places, sym_op_expr): - self.places = places - self.sym_op_expr = sym_op_expr - self.caches = {} + self.places: GeometryCollection = places + self.sym_op_expr: OperandTc = sym_op_expr + self.caches: dict[Hashable, object] = {} @property @memoize_method @@ -854,7 +885,28 @@ def eval(self, context=None, timing_data=None, self, array_context, context, timing_data=timing_data) return execute(self.code, exec_mapper) - def __call__(self, *args, **kwargs): + @overload + def __call__(self: BoundExpression[ArithmeticExpression], + actx: ArrayContext | None = None, + /, **kwargs: ArrayOrContainerOrScalar + ) -> DOFArray | ScalarLike: ... + + @overload + def __call__(self: BoundExpression[MultiVector[ArithmeticExpression]], + actx: ArrayContext | None = None, + /, **kwargs: ArrayOrContainerOrScalar + ) -> MultiVector[DOFArray | ScalarLike]: ... + + @overload + def __call__(self: BoundExpression[ObjectArrayND[ArithmeticExpression]], + actx: ArrayContext | None = None, + /, **kwargs: ArrayOrContainerOrScalar + ) -> ObjectArrayND[DOFArray | ScalarLike]: ... + + def __call__(self, + actx: ArrayContext | None = None, + /, **kwargs: ArrayOrContainerOrScalar + ) -> ArrayOrContainerOrScalar: """Evaluate the expression in *self*, using the input variables given in the dictionary *context*. @@ -862,25 +914,24 @@ def __call__(self, *args, **kwargs): :class:`meshmode.dof_array.DOFArray`, or an object array of these. """ - array_context = None - if len(args) == 1: - array_context, = args - if not isinstance(array_context, PyOpenCLArrayContext): - raise TypeError( - "first positional argument (if given) must be a " - f"PyOpenCLArrayContext: '{type(array_context).__name__}'") - - elif not args: - pass + if not (actx is None or isinstance(actx, PyOpenCLArrayContext)): + raise TypeError( + "first positional argument (if given) must be a " + f"PyOpenCLArrayContext: '{type(actx).__name__}'") - else: - raise TypeError("More than one positional argument supplied. " - "None or an PyOpenCLArrayContext expected.") + return self.eval(kwargs, array_context=actx) - return self.eval(kwargs, array_context=array_context) +def bind( + places: (GeometryCollection + | GeometryLike + | tuple[GeometryLike, GeometryLike] + | Mapping[Hashable, GeometryLike] -def bind(places, expr, auto_where=None): + ), + expr: OperandTc, + auto_where: AutoWhereLike | None = None + ): """ :arg places: a :class:`pytential.collection.GeometryCollection`. Alternatively, any list or mapping that is a valid argument for its @@ -902,7 +953,7 @@ def bind(places, expr, auto_where=None): auto_where = places.auto_where expr = _prepare_expr(places, expr, auto_where=auto_where) - return BoundExpression(places, expr) + return BoundExpression[OperandTc](places, expr) # }}} @@ -911,6 +962,7 @@ def bind(places, expr, auto_where=None): def _bmat(blocks, dtypes): from pytools import single_valued + from pytential.symbolic.matrix import is_zero nrows = blocks.shape[0] diff --git a/pytential/symbolic/mappers.py b/pytential/symbolic/mappers.py index d9ec76769..96309a10f 100644 --- a/pytential/symbolic/mappers.py +++ b/pytential/symbolic/mappers.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2010-2013 Andreas Kloeckner" __license__ = """ @@ -20,41 +23,54 @@ THE SOFTWARE. """ +from collections.abc import Set from dataclasses import replace from functools import reduce +from typing import TYPE_CHECKING, cast -from pymbolic.mapper.stringifier import ( - CSESplittingStringifyMapperMixin, - PREC_NONE, PREC_PRODUCT) +from typing_extensions import override + +import pymbolic.primitives as p +from pymbolic import ArithmeticExpression, ExpressionNode +from pymbolic.geometric_algebra.mapper import ( + Collector as CollectorBase, + CombineMapper as CombineMapperBase, + DerivativeBinder as DerivativeBinderBase, + DerivativeSourceAndNablaComponentCollector as DerivativeSourceAndNablaComponentCollectorBase, # noqa: E501 + DerivativeSourceFinder as DerivativeSourceFinderBase, + EvaluationRewriter as EvaluationRewriterBase, + GraphvizMapper as GraphvizMapperBase, + IdentityMapper as IdentityMapperBase, + NablaComponentToUnitVector as NablaComponentToUnitVectorBase, + StringifyMapper as BaseStringifyMapper, +) from pymbolic.mapper import ( - Mapper, - CachedMapper, - CSECachingMapperMixin, - ) + CachedMapper, + CollectedT, + CSECachingMapperMixin, + Mapper, + ResultT, +) from pymbolic.mapper.dependency import ( - DependencyMapper as DependencyMapperBase) + Dependency, + DependencyMapper as DependencyMapperBase, +) from pymbolic.mapper.flattener import FlattenMapper as FlattenMapperBase -from pymbolic.geometric_algebra.mapper import ( - CombineMapper as CombineMapperBase, - IdentityMapper as IdentityMapperBase, - Collector as CollectorBase, - DerivativeBinder as DerivativeBinderBase, - EvaluationRewriter as EvaluationRewriterBase, - - StringifyMapper as BaseStringifyMapper, - - DerivativeSourceAndNablaComponentCollector - as DerivativeSourceAndNablaComponentCollectorBase, - NablaComponentToUnitVector - as NablaComponentToUnitVectorBase, - DerivativeSourceFinder - as DerivativeSourceFinderBase, - - GraphvizMapper as GraphvizMapperBase) +from pymbolic.mapper.stringifier import ( + PREC_NONE, + PREC_PRODUCT, + CSESplittingStringifyMapperMixin, +) from pymbolic.typing import Expression + import pytential.symbolic.primitives as prim +if TYPE_CHECKING: + from pytential.collection import GeometryCollection + from pytential.symbolic.dof_desc import DOFDescriptor, DOFDescriptorLike, GeometryId + + def rec_int_g_arguments(mapper, expr): densities = mapper.rec(expr.densities) kernel_arguments = { @@ -142,7 +158,7 @@ def map_interpolation(self, expr): return type(expr)(expr.from_dd, expr.to_dd, operand) -class CachedIdentityMapper(CachedMapper, IdentityMapper): +class CachedIdentityMapper(CachedMapper[Expression, []], IdentityMapper): def __call__(self, expr): try: return CachedMapper.__call__(self, expr) @@ -158,7 +174,7 @@ def __call__(self, expr): # {{{ CombineMapper -class CombineMapper(CombineMapperBase): +class CombineMapper(CombineMapperBase[ResultT, []]): def map_node_sum(self, expr): return self.rec(expr.operand) @@ -170,44 +186,45 @@ def map_node_sum(self, expr): map_elementwise_max = map_node_sum map_interpolation = map_node_sum - def map_int_g(self, expr): + def map_int_g(self, expr: prim.IntG) -> ResultT: from pytential.symbolic.primitives import hashable_kernel_args return self.combine( [self.rec(density) for density in expr.densities] + [self.rec(arg_expr) for _, arg_expr in hashable_kernel_args(expr.kernel_arguments)]) - def map_inverse(self, expr): + def map_inverse(self, expr: prim.IterativeInverse) -> ResultT: return self.combine([ self.rec(expr.rhs), *(self.rec(name_expr) for name_expr in expr.extra_vars.values()) ]) - def map_is_shape_class(self, expr): - return set() - - map_error_expression = map_is_shape_class - # }}} # {{{ Collector -class Collector(CollectorBase, CombineMapper): - def map_ones(self, expr): +class Collector(CollectorBase[CollectedT, []], CombineMapper[Set[CollectedT]]): + def map_ones(self, + expr: prim.Ones | prim.ErrorExpression | prim.IsShapeClass + ) -> Set[CollectedT]: return set() + map_is_shape_class = map_ones + map_error_expression = map_ones + map_node_coordinate_component = map_ones map_parametrization_derivative = map_ones map_q_weight = map_ones -class OperatorCollector(Collector): - def map_int_g(self, expr): +class OperatorCollector(Collector[prim.IntG]): + @override + def map_int_g(self, expr: prim.IntG): return {expr} | Collector.map_int_g(self, expr) -class DependencyMapper(DependencyMapperBase, Collector): +class DependencyMapper(DependencyMapperBase[[]], Collector[Dependency]): pass # }}} @@ -223,16 +240,18 @@ class EvaluationRewriter(EvaluationRewriterBase): the structure of the input expression. """ + @override def map_variable(self, expr): return expr - def map_subscript(self, expr): + @override + def map_subscript(self, expr: p.Subscript): aggregate = self.rec(expr.aggregate) index = self.rec(expr.index) if aggregate is expr.aggregate and index is expr.index: return expr - return aggregate[index] + return cast("ExpressionNode", aggregate)[index] map_q_weight = map_variable map_ones = map_variable @@ -247,24 +266,25 @@ def map_node_sum(self, expr): map_node_max = map_node_sum map_node_min = map_node_sum - def map_node_coordinate_component(self, expr): + def map_node_coordinate_component(self, expr: prim.NodeCoordinateComponent): return expr - def map_num_reference_derivative(self, expr): + def map_num_reference_derivative(self, expr: prim.NumReferenceDerivative): operand = self.rec(expr.operand) if operand is expr.operand: return expr return type(expr)(expr.ref_axes, operand, expr.dofdesc) - def map_int_g(self, expr): + def map_int_g(self, expr: prim.IntG): densities, kernel_arguments, changed = rec_int_g_arguments(self, expr) if not changed: return expr return replace(expr, densities=densities, kernel_arguments=kernel_arguments) - def map_common_subexpression(self, expr): + @override + def map_common_subexpression(self, expr: p.CommonSubexpression): child = self.rec(expr.child) if child is expr.child: return expr @@ -295,9 +315,12 @@ class LocationTagger(CSECachingMapperMixin[Expression, []], IdentityMapper): """Used internally by :class:`ToTargetTagger`.""" - def __init__(self, default_target, default_source): - self.default_source = prim.as_dofdesc(default_source) - self.default_target = prim.as_dofdesc(default_target) + def __init__(self, + default_target: DOFDescriptorLike, + default_source: DOFDescriptorLike + ): + self.default_source: DOFDescriptor = prim.as_dofdesc(default_source) + self.default_target: DOFDescriptor = prim.as_dofdesc(default_target) def map_common_subexpression_uncached(self, expr) -> Expression: # Mypy 1.13 complains about this: @@ -354,7 +377,7 @@ def map_elementwise_sum(self, expr): map_elementwise_min = map_elementwise_sum map_elementwise_max = map_elementwise_sum - def map_int_g(self, expr): + def map_int_g(self, expr: prim.IntG): source = expr.source if source.geometry is None: source = source.copy(geometry=self.default_source) @@ -373,7 +396,8 @@ def map_int_g(self, expr): for name, arg_expr in expr.kernel_arguments.items() }) - def map_inverse(self, expr): + @override + def map_inverse(self, expr: prim.IterativeInverse): # NOTE: this doesn't use `_default_dofdesc` because it should be always # evaluated at the targets (ignores `discr_stage`) dofdesc = expr.dofdesc @@ -384,13 +408,14 @@ def map_inverse(self, expr): # don't recurse into expression--it is a separate world that # will be processed once it's executed. - expr.expression, self.rec(expr.rhs), expr.variable_name, + expr.expression, self.rec_arith(expr.rhs), expr.variable_name, { name: self.rec(name_expr) for name, name_expr in expr.extra_vars.items()}, dofdesc) - def map_interpolation(self, expr): + @override + def map_interpolation(self, expr: prim.Interpolation): from_dd = expr.from_dd if from_dd.geometry is None: from_dd = from_dd.copy(geometry=self.default_source) @@ -480,7 +505,7 @@ def map_num_reference_derivative(self, expr): # {{{ DerivativeBinder -class _IsSptiallyVaryingMapper(CombineMapper): +class _IsSptiallyVaryingMapper(CombineMapper[bool]): def combine(self, values): import operator from functools import reduce @@ -503,9 +528,9 @@ class _DerivativeTakerUnsupoortedProductError(Exception): pass -class DerivativeTaker(Mapper): - def __init__(self, ambient_axis): - self.ambient_axis = ambient_axis +class DerivativeTaker(Mapper[ArithmeticExpression, []]): + def __init__(self, ambient_axis: int): + self.ambient_axis: int = ambient_axis def map_constant(self, expr): return 0 @@ -519,7 +544,7 @@ def map_sum(self, expr): from pymbolic.primitives import flattened_sum return flattened_sum(children) - def map_product(self, expr): + def map_product(self, expr: p.Product): const = [] nonconst = [] for subexpr in expr.children: @@ -539,7 +564,7 @@ def map_product(self, expr): from pytools import product return product(const) * self.rec(nonconst[0]) - def map_int_g(self, expr): + def map_int_g(self, expr: prim.IntG): from sumpy.kernel import AxisTargetDerivative target_kernel = AxisTargetDerivative(self.ambient_axis, expr.target_kernel) @@ -630,7 +655,8 @@ def __init__(self, places, from_discr_stage=None): if from_discr_stage is None else from_discr_stage) self.tagger = DiscretizationStageTagger(self.from_discr_stage) - def map_num_reference_derivative(self, expr): + @override + def map_num_reference_derivative(self, expr: prim.NumReferenceDerivative): to_dd = expr.dofdesc if to_dd.discr_stage != prim.QBX_SOURCE_QUAD_STAGE2: return expr @@ -643,7 +669,8 @@ def map_num_reference_derivative(self, expr): from_dd = to_dd.copy(discr_stage=self.from_discr_stage) return prim.interpolate(self.rec(self.tagger(expr)), from_dd, to_dd) - def map_int_g(self, expr): + @override + def map_int_g(self, expr: prim.IntG): if expr.target.discr_stage is None: expr = replace(expr, target=expr.target.to_stage1()) @@ -678,11 +705,12 @@ def map_int_g(self, expr): # {{{ QBXPreprocessor class QBXPreprocessor(IdentityMapper): - def __init__(self, geometry, places): - self.geometry = geometry - self.places = places + def __init__(self, geometry: GeometryId, places: GeometryCollection): + self.geometry: GeometryId = geometry + self.places: GeometryCollection = places - def map_int_g(self, expr): + @override + def map_int_g(self, expr: prim.IntG): if expr.source.geometry != self.geometry: return expr @@ -738,7 +766,7 @@ def map_int_g(self, expr): # {{{ StringifyMapper -def stringify_where(where): +def stringify_where(where: DOFDescriptorLike): return str(prim.as_dofdesc(where)) @@ -852,7 +880,7 @@ def map_is_shape_class(self, expr, enclosing_prec): class PrettyStringifyMapper( - CSESplittingStringifyMapperMixin, StringifyMapper): + CSESplittingStringifyMapperMixin[[]], StringifyMapper): pass # }}} diff --git a/pytential/symbolic/matrix.py b/pytential/symbolic/matrix.py index 8f652d827..86be1b5d3 100644 --- a/pytential/symbolic/matrix.py +++ b/pytential/symbolic/matrix.py @@ -50,22 +50,32 @@ :show-inheritance: """ -from collections.abc import Sequence -from typing import Any +from sys import intern +from typing import TYPE_CHECKING, Any import numpy as np -from sys import intern - -from pytools import memoize_method +import pymbolic.primitives as p from arraycontext import PyOpenCLArrayContext, flatten, unflatten from meshmode.dof_array import DOFArray -from meshmode.discretization import Discretization +from pymbolic.geometric_algebra.mapper import ( + EvaluationRewriter as EvaluationRewriterBase, +) +from pytools import memoize_method from pytential.collection import GeometryCollection from pytential.linalg.utils import TargetAndSourceClusterList from pytential.symbolic.primitives import Variable -from pymbolic.geometric_algebra.mapper import EvaluationRewriter as EvaluationRewriterBase # noqa: E501 + + +if TYPE_CHECKING: + from collections.abc import Sequence + + from meshmode.discretization import Discretization + + from pytential.collection import GeometryCollection + from pytential.linalg.utils import TargetAndSourceClusterList + from pytential.symbolic.primitives import Variable # {{{ helpers @@ -262,13 +272,14 @@ def map_node_coordinate_component(self, expr): actx = self.array_context return actx.to_numpy(flatten(bind(self.places, op)(actx), actx)) - def map_call(self, expr): + def map_call(self, expr: p.Call): arg, = expr.parameters rec_arg = self.rec(arg) if isinstance(rec_arg, np.ndarray) and self.is_kind_matrix(rec_arg): raise RuntimeError("expression is nonlinear in variable") + assert isinstance(expr.function, p.Variable) from numbers import Number if isinstance(rec_arg, Number): return getattr(np, expr.function.name)(rec_arg) @@ -417,10 +428,12 @@ def map_interpolation(self, expr): try: mat = cache[key] except KeyError: - from meshmode.discretization.connection import \ - flatten_chained_connection - from meshmode.discretization.connection.direct import \ - make_direct_full_resample_matrix + from meshmode.discretization.connection import ( + flatten_chained_connection, + ) + from meshmode.discretization.connection.direct import ( + make_direct_full_resample_matrix, + ) conn = self.places.get_connection(expr.from_dd, expr.to_dd) conn = flatten_chained_connection(actx, conn) diff --git a/pytential/symbolic/pde/__init__.py b/pytential/symbolic/pde/__init__.py index a7e7a17cc..ccfdc91e5 100644 --- a/pytential/symbolic/pde/__init__.py +++ b/pytential/symbolic/pde/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2010-2013 Andreas Kloeckner" __license__ = """ diff --git a/pytential/symbolic/pde/beltrami.py b/pytential/symbolic/pde/beltrami.py index 0749ecf72..b1e7fdee7 100644 --- a/pytential/symbolic/pde/beltrami.py +++ b/pytential/symbolic/pde/beltrami.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2021 Alexandru Fikl" __license__ = """ @@ -28,12 +31,15 @@ """ from functools import partial -from typing import Any +from typing import TYPE_CHECKING, Any import numpy as np from pytential import sym -from sumpy.kernel import Kernel + + +if TYPE_CHECKING: + from sumpy.kernel import Kernel # {{{ beltrami operator @@ -258,10 +264,10 @@ def operator(self, D = partial(sym.D, knl, qbx_forced_limit="avg", kernel_arguments=context) Dp = partial(sym.Dp, knl, qbx_forced_limit="avg", kernel_arguments=context) - def Wl(operand: sym.Expression) -> sym.Expression: + def Wl(operand: sym.ExpressionNode) -> sym.ExpressionNode: return sym.Ones() * sym.integral(self.ambient_dim, self.dim, operand) - def Wr(operand: sym.Expression) -> sym.Expression: + def Wr(operand: sym.ExpressionNode) -> sym.ExpressionNode: return sym.Ones() * sym.integral(self.ambient_dim, self.dim, operand) # }}} diff --git a/pytential/symbolic/pde/cahn_hilliard.py b/pytential/symbolic/pde/cahn_hilliard.py index 906b3f67d..a14c2fcbf 100644 --- a/pytential/symbolic/pde/cahn_hilliard.py +++ b/pytential/symbolic/pde/cahn_hilliard.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2017 Andreas Kloeckner" __license__ = """ @@ -25,10 +28,12 @@ .. autoclass:: CahnHilliardOperator """ +from functools import partial + import numpy as np -from pytential.symbolic.pde.scalar import L2WeightedPDEOperator + from pytential import sym -from functools import partial +from pytential.symbolic.pde.scalar import L2WeightedPDEOperator class CahnHilliardOperator(L2WeightedPDEOperator): diff --git a/pytential/symbolic/pde/maxwell/__init__.py b/pytential/symbolic/pde/maxwell/__init__.py index 7b76c2a6c..a108ae8cf 100644 --- a/pytential/symbolic/pde/maxwell/__init__.py +++ b/pytential/symbolic/pde/maxwell/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2010-2013 Andreas Kloeckner" __license__ = """ @@ -20,11 +23,13 @@ THE SOFTWARE. """ +from collections import namedtuple +from functools import partial + import numpy as np from pytential import sym -from collections import namedtuple -from functools import partial + tangential_to_xyz = sym.tangential_to_xyz xyz_to_tangential = sym.xyz_to_tangential diff --git a/pytential/symbolic/pde/maxwell/waveguide.py b/pytential/symbolic/pde/maxwell/waveguide.py index 14dde8969..f5eb6f5d8 100644 --- a/pytential/symbolic/pde/maxwell/waveguide.py +++ b/pytential/symbolic/pde/maxwell/waveguide.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013-2016 Andreas Kloeckner" __license__ = """ @@ -30,8 +33,9 @@ import numpy as np -from pytential import sym from pytools import memoize_method + +from pytential import sym from pytential.symbolic.pde.scalar import L2WeightedPDEOperator diff --git a/pytential/symbolic/pde/scalar.py b/pytential/symbolic/pde/scalar.py index fd7bb4cda..9f5f50cfe 100644 --- a/pytential/symbolic/pde/scalar.py +++ b/pytential/symbolic/pde/scalar.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2010-2013 Andreas Kloeckner" __license__ = """ @@ -31,10 +34,9 @@ import numpy as np -from pytential import sym +from sumpy.kernel import DirectionalSourceDerivative, Kernel -from sumpy.kernel import Kernel -from sumpy.kernel import DirectionalSourceDerivative +from pytential import sym # {{{ L^2 weighting diff --git a/pytential/symbolic/primitives.py b/pytential/symbolic/primitives.py index 47ad301cd..e0a3ba436 100644 --- a/pytential/symbolic/primitives.py +++ b/pytential/symbolic/primitives.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2010-2013 Andreas Kloeckner" __license__ = """ @@ -20,41 +23,72 @@ THE SOFTWARE. """ -from collections.abc import Callable, Iterable, Sequence from dataclasses import field -from warnings import warn from functools import partial -from typing import Any, Concatenate, Literal, TypeAlias, TypeVar +from typing import ( + TYPE_CHECKING, + Any, + Concatenate, + Literal, + TypeAlias, + TypeVar, + cast, + overload, +) +from warnings import warn import numpy as np +from typing_extensions import deprecated, override, reveal_type -import modepy as mp -from pymbolic import ExpressionNode, Variable -from pymbolic.primitives import ( # noqa: N813 - Variable as var, - cse_scope as cse_scope_base, - make_common_subexpression as cse, - expr_dataclass) +from pymbolic import Expression, ExpressionNode as ExpressionNodeBase, Variable from pymbolic.geometric_algebra import MultiVector, componentwise from pymbolic.geometric_algebra.primitives import ( - NablaComponent, Derivative as DerivativeBase) -from pymbolic.primitives import make_sym_vector + Derivative as DerivativeBase, + NablaComponent, +) +from pymbolic.primitives import ( # noqa: N813 + Variable as var, + cse_scope as cse_scope_base, + expr_dataclass, + make_common_subexpression as cse, + make_sym_vector, +) from pymbolic.typing import ArithmeticExpression - from pytools import P, obj_array from pytools.obj_array import ( - new_1d as make_obj_array, - flat as flat_obj_array, + ObjectArray, + ObjectArray2D, + ObjectArrayND, + ShapeT, + from_numpy, ) -from sumpy.kernel import Kernel, SpatialConstant +from sumpy.kernel import Kernel +from sumpy.symbolic import SpatialConstant from pytential.symbolic.dof_desc import ( - DEFAULT_SOURCE, DEFAULT_TARGET, DEFAULT_DOFDESC, - QBX_SOURCE_STAGE1, QBX_SOURCE_STAGE2, QBX_SOURCE_QUAD_STAGE2, - GRANULARITY_NODE, GRANULARITY_CENTER, GRANULARITY_ELEMENT, - DOFDescriptor, DOFDescriptorLike, - as_dofdesc, - ) + DEFAULT_DOFDESC, + DEFAULT_SOURCE, + DEFAULT_TARGET, + GRANULARITY_CENTER, + GRANULARITY_ELEMENT, + GRANULARITY_NODE, + QBX_SOURCE_QUAD_STAGE2, + QBX_SOURCE_STAGE1, + QBX_SOURCE_STAGE2, + DOFDescriptor, + DOFDescriptorLike, + DOFGranularity, + as_dofdesc, +) + + +if TYPE_CHECKING: + from collections.abc import Callable, Iterable, Sequence + + import modepy as mp + from loopy.symbolic import StringifyMapper + from pytools import P + __doc__ = """ .. |dofdesc-blurb| replace:: A @@ -105,6 +139,10 @@ .. autoclass:: Operand +.. autoclass:: OperandTc + + A type variable upper-bounded by :class:`Operand`. + .. autoclass:: ArithmeticExpressionT .. autoclass:: QBXForcedLimit @@ -333,7 +371,7 @@ """ __all__ = ( - "Expression", + "ExpressionNode", "Operand", "ArithmeticExpressionT", "QBXForcedLimit", @@ -379,8 +417,6 @@ "pretty", - # re-exported symbols, maybe questionable - "make_obj_array", "flat_obj_array", "DEFAULT_SOURCE", "DEFAULT_TARGET", "QBX_SOURCE_STAGE1", "QBX_SOURCE_STAGE2", "QBX_SOURCE_QUAD_STAGE2", "GRANULARITY_NODE", "GRANULARITY_CENTER", "GRANULARITY_ELEMENT", @@ -392,20 +428,26 @@ @expr_dataclass() -class Expression(ExpressionNode): +class ExpressionNode(ExpressionNodeBase): """A subclass of :class:`pymbolic.primitives.ExpressionNode` for use with :mod:`pytential` mappers. """ - def make_stringifier(self, originating_stringifier=None): + @override + def make_stringifier(self, originating_stringifier: StringifyMapper | None = None): from pytential.symbolic.mappers import StringifyMapper return StringifyMapper() Operand: TypeAlias = ( ArithmeticExpression - | np.ndarray[Any, np.dtype[Any]] + | ObjectArrayND[ArithmeticExpression] | MultiVector[ArithmeticExpression]) +OperandTc = TypeVar("OperandTc", + ArithmeticExpression, + ObjectArrayND[ArithmeticExpression], + MultiVector[ArithmeticExpression], + Operand) QBXForcedLimit: TypeAlias = Literal[-2, -1, 1, 1, "avg"] | None @@ -419,7 +461,7 @@ class cse_scope(cse_scope_base): # noqa: N801 def for_each_expression( f: Callable[Concatenate[ArithmeticExpression, P], ArithmeticExpression] - ) -> Callable[Concatenate[Operand, P], Operand]: + ) -> Callable[Concatenate[OperandTc, P], OperandTc]: """A decorator that takes a function that can only work on expressions and transforms it into a function that can be applied componentwise on :class:`numpy.ndarray` or :class:`~pymbolic.geometric_algebra.MultiVector`. @@ -428,14 +470,14 @@ def for_each_expression( from functools import wraps @wraps(f) - def wrapper(operand: Operand, *args: P.args, **kwargs: P.kwargs) -> Operand: - if isinstance(operand, np.ndarray | MultiVector): + def wrapper(operand: OperandTc, *args: P.args, **kwargs: P.kwargs) -> OperandTc: + if isinstance(operand, (ObjectArray, MultiVector)): def func(operand_i: ArithmeticExpression) -> ArithmeticExpression: return f(operand_i, *args, **kwargs) return componentwise(func, operand) else: - return f(operand, *args, **kwargs) + return cast("OperandTc", f(operand, *args, **kwargs)) return wrapper @@ -448,7 +490,7 @@ class NamedIntermediateResult(Variable): @expr_dataclass() -class ErrorExpression(Expression): +class ErrorExpression(ExpressionNode): """An expression that, if evaluated, causes an error with the supplied *message*. @@ -463,7 +505,12 @@ def make_sym_mv(name: str, num_components: int) -> MultiVector[ArithmeticExpress return MultiVector(make_sym_vector(name, num_components)) -def make_sym_surface_mv(name, ambient_dim, dim, dofdesc=None): +def make_sym_surface_mv( + name: str, + ambient_dim: int, + dim: int, + dofdesc: DOFDescriptorLike = None + ): par_grad = parametrization_derivative_matrix(ambient_dim, dim, dofdesc) return sum( @@ -474,13 +521,34 @@ def make_sym_surface_mv(name, ambient_dim, dim, dofdesc=None): @expr_dataclass() class Function(Variable): - def __call__(self, operand, *args, **kwargs): + @overload + def __call__(self, + operand: ArithmeticExpression, + *args: Operand, + **kwargs: Operand + ) -> ArithmeticExpression: ... + + @overload + def __call__(self, + operand: ObjectArray[ShapeT, ArithmeticExpression], + *args: Operand, + **kwargs: Operand + ) -> ObjectArray[ShapeT, ArithmeticExpression]: ... + + @override + def __call__(self, + operand: (ArithmeticExpression + | ObjectArray[ShapeT, ArithmeticExpression]), + *args: Operand, + **kwargs: Operand + ) -> (ArithmeticExpression + | ObjectArray[ShapeT, ArithmeticExpression]): # If the call is handed an object array full of operands, # return an object array of the operator applied to each of the # operands. - if isinstance(operand, np.ndarray) and operand.dtype.char == "O": - def make_op(operand_i): + if isinstance(operand, ObjectArray): + def make_op(operand_i: ArithmeticExpression): return self(operand_i, *args, **kwargs) return obj_array.vectorize(make_op, operand) @@ -525,7 +593,7 @@ class NumpyMathFunction(Function): # {{{ discretization properties @expr_dataclass() -class DiscretizationProperty(Expression): +class DiscretizationProperty(ExpressionNode): """A quantity that depends exclusively on the discretization. .. autoattribute:: dofdesc @@ -556,7 +624,7 @@ class IsShapeClass(DiscretizationProperty): """A :class:`modepy.Shape` subclass.""" # FIXME: this is added for backwards compatibility with pre-dataclass expressions - def __init__(self, shape: mp.Shape, dofdesc: DOFDescriptorLike) -> None: + def __init__(self, shape: mp.Shape, dofdesc: DOFDescriptor) -> None: object.__setattr__(self, "shape", shape) super().__init__(dofdesc) # type: ignore[arg-type] @@ -578,12 +646,12 @@ class NodeCoordinateComponent(DiscretizationProperty): # FIXME: this is added for backwards compatibility with pre-dataclass expressions def __init__(self, ambient_axis: int, - dofdesc: DOFDescriptorLike | None = None) -> None: + dofdesc: DOFDescriptor) -> None: object.__setattr__(self, "ambient_axis", ambient_axis) super().__init__(dofdesc) # type: ignore[arg-type] -def nodes(ambient_dim, dofdesc=None): +def nodes(ambient_dim: int, dofdesc: DOFDescriptorLike = None): """Return a :class:`pymbolic.geometric_algebra.MultiVector` of node locations. """ @@ -617,7 +685,7 @@ def __new__(cls, ref_axes: int | tuple[tuple[int, int], ...] | None = None, operand: Operand | None = None, dofdesc: DOFDescriptor | None = None, - ) -> "NumReferenceDerivative": + ) -> NumReferenceDerivative: if isinstance(operand, np.ndarray | MultiVector): warn(f"Passing {type(operand)} directly to {cls.__name__!r} " "is deprecated and will result in an error from 2025. Use " @@ -687,7 +755,8 @@ def reference_jacobian( func: Sequence[ArithmeticExpression], output_dim: int, dim: int, - dofdesc: DOFDescriptorLike = None): + dofdesc: DOFDescriptorLike = None + ) -> ObjectArray2D[ArithmeticExpression]: """Return a :class:`numpy.ndarray` representing the Jacobian of a vector function with respect to the reference coordinates. """ @@ -699,7 +768,7 @@ def reference_jacobian( for j in range(dim): jac[i, j] = num_reference_derivative(func_component, j, dofdesc) - return jac + return from_numpy(jac) def parametrization_derivative_matrix( @@ -748,13 +817,19 @@ def pseudoscalar( "pseudoscalar", cse_scope.DISCRETIZATION) -def area_element(ambient_dim, dim=None, dofdesc=None): +def area_element( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): return cse( sqrt(pseudoscalar(ambient_dim, dim, dofdesc).norm_squared()), "area_element", cse_scope.DISCRETIZATION) -def sqrt_jac_q_weight(ambient_dim, dim=None, dofdesc=None): +def sqrt_jac_q_weight( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): dofdesc = as_dofdesc(dofdesc) return cse( sqrt( @@ -763,7 +838,7 @@ def sqrt_jac_q_weight(ambient_dim, dim=None, dofdesc=None): "sqrt_jac_q_weight", cse_scope.DISCRETIZATION) -def normal(ambient_dim, dim=None, dofdesc=None): +def normal(ambient_dim: int, dim: int | None = None, dofdesc: DOFDescriptorLike = None): """Exterior unit normals.""" # Don't be tempted to add a sign here. As it is, it produces @@ -780,7 +855,10 @@ def normal(ambient_dim, dim=None, dofdesc=None): scope=cse_scope.DISCRETIZATION) -def mean_curvature(ambient_dim, dim=None, dofdesc=None): +def mean_curvature( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): """(Numerical) mean curvature.""" if dim is None: @@ -806,15 +884,21 @@ def mean_curvature(ambient_dim, dim=None, dofdesc=None): return kappa -def first_fundamental_form(ambient_dim, dim=None, dofdesc=None): +def first_fundamental_form( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): if dim is None: dim = ambient_dim - 1 pd_mat = parametrization_derivative_matrix(ambient_dim, dim, dofdesc) - return cse(np.dot(pd_mat.T, pd_mat), "fundform1") + return cse(pd_mat.T @ pd_mat, "fundform1") -def second_fundamental_form(ambient_dim, dim=None, dofdesc=None): +def second_fundamental_form( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): """Compute the second fundamental form of a surface. This is in reference to the reference-to-global mapping in use for each element. @@ -830,7 +914,9 @@ def second_fundamental_form(ambient_dim, dim=None, dofdesc=None): raise NotImplementedError("only available for surfaces in 3D") dofdesc = as_dofdesc(dofdesc) - r = nodes(ambient_dim, dofdesc=dofdesc).as_vector() + r = from_numpy( + nodes(ambient_dim, dofdesc=dofdesc).as_vector(), + ArithmeticExpression) # https://en.wikipedia.org/w/index.php?title=Second_fundamental_form&oldid=821047433#Classical_notation @@ -838,21 +924,25 @@ def second_fundamental_form(ambient_dim, dim=None, dofdesc=None): ruv = num_reference_derivative(r, ((0, 1), (1, 1)), dofdesc) rvv = num_reference_derivative(r, ((1, 2),), dofdesc) - nrml = normal(ambient_dim, dim, dofdesc).as_vector() + nrml = from_numpy( + normal(ambient_dim, dim, dofdesc).as_vector(), ArithmeticExpression) - ff2_l = cse(np.dot(ruu, nrml), "fundform2_L") - ff2_m = cse(np.dot(ruv, nrml), "fundform2_M") - ff2_n = cse(np.dot(rvv, nrml), "fundform2_N") + ff2_l = cse(ruu @ nrml, "fundform2_L") + ff2_m = cse(ruv @ nrml, "fundform2_M") + ff2_n = cse(rvv @ nrml, "fundform2_N") result = np.zeros((2, 2), dtype=object) result[0, 0] = ff2_l result[0, 1] = result[1, 0] = ff2_m result[1, 1] = ff2_n - return result + return from_numpy(result, ArithmeticExpression) -def shape_operator(ambient_dim, dim=None, dofdesc=None): +def shape_operator( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): if dim is None: dim = ambient_dim - 1 @@ -860,21 +950,25 @@ def shape_operator(ambient_dim, dim=None, dofdesc=None): raise NotImplementedError("only available for surfaces in 3D") # https://en.wikipedia.org/w/index.php?title=Differential_geometry_of_surfaces&oldid=833587563 - (E, F), (F, G) = first_fundamental_form(ambient_dim, dim, dofdesc) - (e, f), (f, g) = second_fundamental_form(ambient_dim, dim, dofdesc) + (E, F), (_F, G) = first_fundamental_form(ambient_dim, dim, dofdesc) + (e, f), (_f, g) = second_fundamental_form(ambient_dim, dim, dofdesc) + reveal_type(E) result = np.zeros((2, 2), dtype=object) result[0, 0] = e*G-f*F result[0, 1] = f*G-g*F result[1, 0] = f*E-e*F result[1, 1] = g*E-f*F - + result_obj = from_numpy(result, ArithmeticExpression) return cse( - 1/(E*G-F*F)*result, + 1/(E*G-F*F)*result_obj, "shape_operator") -def _element_size(ambient_dim, dim=None, dofdesc=None): +def _element_size( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): # A broken quasi-1D approximation of 1D element size. Do not use. if dim is None: dim = ambient_dim - 1 @@ -957,8 +1051,10 @@ def _small_sym_mat_eigenvalues(mat): raise NotImplementedError(f"eigenvalue formula for {m}x{n} matrices") -def _equilateral_parametrization_derivative_matrix(ambient_dim, dim=None, - dofdesc=None): +def _equilateral_parametrization_derivative_matrix( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): if dim is None: dim = ambient_dim - 1 @@ -975,7 +1071,10 @@ def _equilateral_parametrization_derivative_matrix(ambient_dim, dim=None, "equilateral_pder_mat") -def _simplex_mapping_max_stretch_factor(ambient_dim, dim=None, dofdesc=None): +def _simplex_mapping_max_stretch_factor( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): """Return the largest factor by which the reference-to-global mapping stretches the bi-unit (i.e. :math:`[-1, 1]`) reference element along any axis. @@ -1015,7 +1114,10 @@ def _simplex_mapping_max_stretch_factor(ambient_dim, dim=None, dofdesc=None): return Max(tuple(stretch_factors)) -def _hypercube_mapping_max_stretch_factor(ambient_dim, dim=None, dofdesc=None): +def _hypercube_mapping_max_stretch_factor( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): if dim is None: dim = ambient_dim - 1 @@ -1033,7 +1135,10 @@ def _hypercube_mapping_max_stretch_factor(ambient_dim, dim=None, dofdesc=None): return Max(tuple(stretch_factors)) -def _mapping_max_stretch_factor(ambient_dim, dim=None, dofdesc=None): +def _mapping_max_stretch_factor( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): simplex_stretch_factor = _simplex_mapping_max_stretch_factor( ambient_dim, dim, dofdesc=dofdesc) hypercube_stretch_factor = _hypercube_mapping_max_stretch_factor( @@ -1051,7 +1156,10 @@ def _mapping_max_stretch_factor(ambient_dim, dim=None, dofdesc=None): return cse(stretch_factor, "mapping_stretch_factor", cse_scope.DISCRETIZATION) -def _max_curvature(ambient_dim, dim=None, dofdesc=None): +def _max_curvature( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): # An attempt at a 'max curvature' criterion. if dim is None: @@ -1071,7 +1179,10 @@ def _max_curvature(ambient_dim, dim=None, dofdesc=None): "dimensions" % ambient_dim) -def _scaled_max_curvature(ambient_dim, dim=None, dofdesc=None): +def _scaled_max_curvature( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): """An attempt at a unit-less, scale-invariant quantity that characterizes 'how much curviness there is on an element'. Values seem to hover around 1 on typical meshes. Empirical evidence suggests that elements exceeding @@ -1087,7 +1198,7 @@ def _scaled_max_curvature(ambient_dim, dim=None, dofdesc=None): # {{{ qbx-specific geometry -def _expansion_radii_factor(ambient_dim, dim): +def _expansion_radii_factor(ambient_dim: int, dim: int | None): if dim is None: dim = ambient_dim - 1 @@ -1095,7 +1206,11 @@ def _expansion_radii_factor(ambient_dim, dim): return 0.5 * dim_fudge_factor -def _quad_resolution(ambient_dim, dim=None, granularity=None, dofdesc=None): +def _quad_resolution( + ambient_dim: int, + dim: int | None = None, + granularity: DOFGranularity | None = None, + dofdesc: DOFDescriptorLike = None): """This measures the quadrature resolution across the mesh. In a 1D uniform mesh of uniform 'parametrization speed', it should be the same as the element length. @@ -1114,8 +1229,11 @@ def _quad_resolution(ambient_dim, dim=None, granularity=None, dofdesc=None): return interpolate(stretch, from_dd, to_dd) -def _source_danger_zone_radii(ambient_dim, dim=None, - granularity=None, dofdesc=None): +def _source_danger_zone_radii( + ambient_dim: int, + dim: int | None = None, + granularity: DOFGranularity | None = None, + dofdesc: DOFDescriptorLike = None): # This should be the expression of the expansion radii, but # # - in reference to the stage 2 discretization @@ -1131,13 +1249,20 @@ def _source_danger_zone_radii(ambient_dim, dim=None, dim=dim, granularity=granularity, dofdesc=dofdesc) -def _close_target_tunnel_radii(ambient_dim, dim=None, - granularity=None, dofdesc=None): +def _close_target_tunnel_radii( + ambient_dim: int, + dim: int | None = None, + granularity: DOFGranularity = None, + dofdesc: DOFDescriptorLike = None): return 0.5 * expansion_radii(ambient_dim, dim=dim, granularity=granularity, dofdesc=dofdesc) -def expansion_radii(ambient_dim, dim=None, granularity=None, dofdesc=None): +def expansion_radii( + ambient_dim: int, + dim: int | None = None, + granularity=None, + dofdesc: DOFDescriptorLike = None): factor = _expansion_radii_factor(ambient_dim, dim) return cse(factor * _quad_resolution(ambient_dim, dim=dim, granularity=granularity, dofdesc=dofdesc), @@ -1145,7 +1270,11 @@ def expansion_radii(ambient_dim, dim=None, granularity=None, dofdesc=None): cse_scope.DISCRETIZATION) -def expansion_centers(ambient_dim, side, dim=None, dofdesc=None): +def expansion_centers( + ambient_dim: int, + side: QBXForcedLimit, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): x = nodes(ambient_dim, dofdesc=dofdesc) normals = normal(ambient_dim, dim=dim, dofdesc=dofdesc) radii = expansion_radii(ambient_dim, dim=dim, @@ -1157,7 +1286,11 @@ def expansion_centers(ambient_dim, side, dim=None, dofdesc=None): cse_scope.DISCRETIZATION) -def interleaved_expansion_centers(ambient_dim, dim=None, dofdesc=None): +def interleaved_expansion_centers( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None + ): centers = ( expansion_centers(ambient_dim, -1, dim=dim, dofdesc=dofdesc), expansion_centers(ambient_dim, +1, dim=dim, dofdesc=dofdesc) @@ -1168,7 +1301,7 @@ def interleaved_expansion_centers(ambient_dim, dim=None, dofdesc=None): return interpolate(centers, source, target) -def h_max(ambient_dim, dim=None, dofdesc=None): +def h_max(ambient_dim: int, dim: int | None = None, dofdesc: DOFDescriptorLike = None): """Defines a maximum element size in the discretization.""" r = _quad_resolution(ambient_dim, dim=dim, dofdesc=dofdesc) @@ -1177,7 +1310,7 @@ def h_max(ambient_dim, dim=None, dofdesc=None): cse_scope.DISCRETIZATION) -def h_min(ambient_dim, dim=None, dofdesc=None): +def h_min(ambient_dim: int, dim: int | None = None, dofdesc: DOFDescriptorLike = None): """Yields an approximate minimum element size in the discretization.""" r = _quad_resolution(ambient_dim, dim=dim, dofdesc=dofdesc) @@ -1186,7 +1319,10 @@ def h_min(ambient_dim, dim=None, dofdesc=None): cse_scope.DISCRETIZATION) -def weights_and_area_elements(ambient_dim, dim=None, dofdesc=None): +def weights_and_area_elements( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): """Combines :func:`area_element` and :class:`QWeight`.""" dofdesc = as_dofdesc(dofdesc) area = area_element(ambient_dim, dim=dim, dofdesc=dofdesc) @@ -1201,7 +1337,7 @@ def weights_and_area_elements(ambient_dim, dim=None, dofdesc=None): # {{{ operators @expr_dataclass() -class Interpolation(Expression): +class Interpolation(ExpressionNode): """Interpolate quantity from a DOF described by *from_dd* to a DOF described by *to_dd*." @@ -1222,7 +1358,7 @@ class Interpolation(Expression): def __new__(cls, from_dd: DOFDescriptorLike, to_dd: DOFDescriptorLike, - operand: Operand) -> "Interpolation": + operand: Operand) -> Interpolation: from_dd = as_dofdesc(from_dd) to_dd = as_dofdesc(to_dd) @@ -1240,7 +1376,7 @@ def make_op(operand_i): return componentwise(make_op, operand) # type: ignore[return-value] else: - return Expression.__new__(cls) + return ExpressionNode.__new__(cls) def __post_init__(self) -> None: if not isinstance(self.from_dd, DOFDescriptor): @@ -1260,6 +1396,7 @@ def __post_init__(self) -> None: object.__setattr__(self, "to_dd", as_dofdesc(self.to_dd)) +@deprecated("Use interpolate") def interp(from_dd, to_dd, operand): warn("Calling 'interp' is deprecated and it will be removed in 2025. Use " "'interpolate' instead (has a different argument order).", @@ -1269,9 +1406,9 @@ def interp(from_dd, to_dd, operand): @for_each_expression -def interpolate(operand: ArithmeticExpressionT, +def interpolate(operand: OperandTc, from_dd: DOFDescriptorLike, - to_dd: DOFDescriptorLike) -> ArithmeticExpressionT | Interpolation: + to_dd: DOFDescriptorLike) -> OperandTc: from_dd = as_dofdesc(from_dd) to_dd = as_dofdesc(to_dd) @@ -1282,16 +1419,16 @@ def interpolate(operand: ArithmeticExpressionT, @expr_dataclass() -class SingleScalarOperandExpression(Expression): +class SingleScalarOperandExpression(ExpressionNode): """ .. autoattribute:: operand """ - operand: Operand + operand: ArithmeticExpression """An expression or an array on which to apply the operation.""" def __new__(cls, - operand: Operand | None = None) -> "SingleScalarOperandExpression": + operand: Operand | None = None) -> SingleScalarOperandExpression: if isinstance(operand, np.ndarray | MultiVector): name = cls.mapper_method[4:] warn(f"Passing {type(operand)} directly to {cls.__name__!r} " @@ -1304,7 +1441,7 @@ def make_op(operand_i): return componentwise(make_op, operand) # type: ignore[return-value] else: - return Expression.__new__(cls) + return ExpressionNode.__new__(cls) @expr_dataclass() @@ -1346,7 +1483,11 @@ def node_min(expr: ArithmeticExpression) -> NodeMin: return NodeMin(expr) -def integral(ambient_dim, dim, operand, dofdesc=None): +def integral( + ambient_dim: int, + dim: int, + operand: Operand, + dofdesc: DOFDescriptorLike = None): """A volume integral of *operand*.""" dofdesc = as_dofdesc(dofdesc) @@ -1357,13 +1498,13 @@ def integral(ambient_dim, dim, operand, dofdesc=None): @expr_dataclass() -class SingleScalarOperandExpressionWithWhere(Expression): +class SingleScalarOperandExpressionWithWhere(ExpressionNode): """ .. autoattribute:: operand .. autoattribute:: dofdesc """ - operand: Operand + operand: ArithmeticExpression """An expression or an array on which to apply the operation.""" # pylint: disable-next=invalid-field-call @@ -1373,7 +1514,7 @@ class SingleScalarOperandExpressionWithWhere(Expression): def __new__(cls, operand: Operand | None = None, dofdesc: DOFDescriptorLike | None = None, - ) -> "SingleScalarOperandExpressionWithWhere": + ) -> SingleScalarOperandExpressionWithWhere: if isinstance(operand, np.ndarray | MultiVector): name = cls.mapper_method[4:] warn(f"Passing {type(operand)} directly to {cls.__name__!r} " @@ -1386,7 +1527,7 @@ def make_op(operand_i): return componentwise(make_op, operand) # type: ignore[return-value] else: - return Expression.__new__(cls) + return ExpressionNode.__new__(cls) def __post_init__(self) -> None: if not isinstance(self.dofdesc, DOFDescriptor): @@ -1444,7 +1585,7 @@ def elementwise_max(expr: ArithmeticExpression, @expr_dataclass() -class Ones(Expression): +class Ones(ExpressionNode): """A DOF-vector that is constant *one* on the whole discretization. """ @@ -1462,25 +1603,29 @@ def __post_init__(self) -> None: object.__setattr__(self, "dofdesc", as_dofdesc(self.dofdesc)) -def ones_vec(dim, dofdesc=None): +def ones_vec(dim: int, dofdesc: DOFDescriptorLike = None): dofdesc = as_dofdesc(dofdesc) return MultiVector(obj_array.new_1d(dim*[Ones(dofdesc)])) -def area(ambient_dim, dim, dofdesc=None): +def area(ambient_dim: int, dim: int, dofdesc: DOFDescriptorLike = None): dofdesc = as_dofdesc(dofdesc) return cse(integral(ambient_dim, dim, Ones(dofdesc), dofdesc), "area", cse_scope.DISCRETIZATION) -def mean(ambient_dim, dim, operand, dofdesc=None): +def mean( + ambient_dim: int, + dim: int, + operand: Operand, + dofdesc: DOFDescriptorLike = None): return ( integral(ambient_dim, dim, operand, dofdesc) / area(ambient_dim, dim, dofdesc)) @expr_dataclass() -class IterativeInverse(Expression): +class IterativeInverse(ExpressionNode): """A symbolic :math:`A x = b` linear solve expression. .. autoattribute:: expression @@ -1498,7 +1643,7 @@ class IterativeInverse(Expression): """The name of the variable to solve for.""" # pylint: disable-next=invalid-field-call - extra_vars: dict[str, Variable] = field(default_factory=dict) + extra_vars: dict[str, Expression] = field(default_factory=dict) """A dictionary of additional variables required to define the operator.""" # pylint: disable-next=invalid-field-call @@ -1539,12 +1684,12 @@ def resolve(expr): return DerivativeBinder()(expr) -def dd_axis(axis, ambient_dim, operand): +def dd_axis(axis: int, ambient_dim: int, operand: OperandTc) -> OperandTc: """Return the derivative along (XYZ) axis *axis* (in *ambient_dim*-dimensional space) of *operand*. """ - if isinstance(operand, np.ndarray) and operand.dtype.char == "O": - def dd_axis_comp(operand_i): + if isinstance(operand, ObjectArray): + def dd_axis_comp(operand_i: ArithmeticExpression): return dd_axis(axis, ambient_dim, operand_i) return obj_array.vectorize(dd_axis_comp, operand) @@ -1566,24 +1711,27 @@ def dd_axis_comp(operand_i): d_dz = partial(dd_axis, 2) -def grad_mv(ambient_dim, operand): +def grad_mv( + ambient_dim: int, + operand: ArithmeticExpression + ) -> MultiVector[ArithmeticExpression]: """Return the *ambient_dim*-dimensional gradient of *operand* as a :class:`pymbolic.geometric_algebra.MultiVector`. """ d = Derivative() - return d.resolve( - d.dnabla(ambient_dim) * d(operand)) + return cast("MultiVector[ArithmeticExpression]", + cast("object", d.resolve(d.dnabla(ambient_dim) * d(operand)))) -def grad(ambient_dim, operand): +def grad(ambient_dim: int, operand: OperandTc): """Return the *ambient_dim*-dimensional gradient of *operand* as a :class:`numpy.ndarray`. """ - return grad_mv(ambient_dim, operand).as_vector() + return from_numpy(grad_mv(ambient_dim, operand).as_vector()) -def laplace(ambient_dim, operand): +def laplace(ambient_dim: int, operand: OperandTc) -> OperandTc: d = Derivative() nabla = d.dnabla(ambient_dim) return d.resolve(nabla | d( @@ -1603,7 +1751,7 @@ def hashable_kernel_args(kernel_arguments): @expr_dataclass(init=False, hash=False) -class IntG(Expression): +class IntG(ExpressionNode): r""" .. math:: @@ -1636,7 +1784,7 @@ class IntG(Expression): derivatives attached. k-th elements represents the k-th source derivative operator above. """ - densities: tuple[Expression, ...] + densities: tuple[ExpressionNode, ...] """A tuple of density expressions. Length of this tuple must match the length of the *source_kernels* arguments. """ @@ -1659,20 +1807,17 @@ class IntG(Expression): to succeeds even if no applicable QBX center is found use ``±2``. """ - # pylint: disable-next=invalid-field-call source: DOFDescriptor = field(default_factory=lambda: DEFAULT_DOFDESC) """The symbolic name of the source discretization. This name is bound to a concrete :class:`~pytential.source.LayerPotentialSourceBase` by :func:`pytential.bind`. """ - # pylint: disable-next=invalid-field-call target: DOFDescriptor = field(default_factory=lambda: DEFAULT_DOFDESC) """The symbolic name of the set of targets. This name gets assigned to a concrete target set by :func:`pytential.bind`. """ - # pylint: disable-next=invalid-field-call kernel_arguments: dict[str, Operand] = field(default_factory=dict) """A dictionary mapping named :class:`~sumpy.kernel.Kernel` arguments (see :meth:`~sumpy.kernel.Kernel.get_args` and @@ -1684,7 +1829,7 @@ def __init__( self, target_kernel: Kernel, source_kernels: Iterable[Kernel], - densities: Iterable[Expression], + densities: Iterable[ExpressionNode], qbx_forced_limit: QBXForcedLimit, source: DOFDescriptorLike | None = None, target: DOFDescriptorLike | None = None, @@ -1785,7 +1930,7 @@ def __post_init__(self) -> None: "Kernel argument(s) not recognized: '{}'".format(", ".join(extra_args)) ) - def copy(self, **kwargs) -> "IntG": + def copy(self, **kwargs) -> IntG: warn(f"'{type(self).__name__}.copy' is deprecated and will be removed in " f"2025. {type(self)} is a dataclass now and can use " "'dataclasses.replace'.", DeprecationWarning, stacklevel=2) @@ -1840,9 +1985,10 @@ def _insert_source_derivative_into_kernel(kernel): _insert_source_derivative_into_kernel(kernel.inner_kernel)) -def _get_dir_vec(dsource, ambient_dim): +def _get_dir_vec(dsource, ambient_dim: int): from pymbolic.mapper.coefficient import ( - CoefficientCollector as CoefficientCollectorBase) + CoefficientCollector as CoefficientCollectorBase, + ) class _DSourceCoefficientFinder(CoefficientCollectorBase): def map_nabla_component(self, expr): @@ -1869,7 +2015,7 @@ def map_quotient(self, expr): return dir_vec -def int_g_dsource(ambient_dim, dsource, kernel, density, +def int_g_dsource(ambient_dim: int, dsource, kernel, density, qbx_forced_limit, source=None, target=None, kernel_arguments=None, **kwargs): r""" @@ -1933,8 +2079,7 @@ def int_g_vec(kernel, density, qbx_forced_limit, source=None, target=None, "vectorizing" behavior of of the constructor of :class:`IntG` for use cases where that is preferred. """ - from sumpy.kernel import (SourceTransformationRemover, - TargetTransformationRemover) + from sumpy.kernel import SourceTransformationRemover, TargetTransformationRemover sxr = SourceTransformationRemover() txr = TargetTransformationRemover() @@ -1976,7 +2121,11 @@ def S(kernel, density, kernel_arguments, **kwargs) -def tangential_derivative(ambient_dim, operand, dim=None, dofdesc=None): +def tangential_derivative( + ambient_dim: int, + operand: Operand, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): pder = ( pseudoscalar(ambient_dim, dim, dofdesc) / area_element(ambient_dim, dim, dofdesc)) @@ -1987,14 +2136,22 @@ def tangential_derivative(ambient_dim, operand, dim=None, dofdesc=None): (d.dnabla(ambient_dim) * d(operand)) >> pder) -def normal_derivative(ambient_dim, operand, dim=None, dofdesc=None): +def normal_derivative( + ambient_dim: int, + operand, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): d = Derivative() return d.resolve( (normal(ambient_dim, dim, dofdesc).scalar_product(d.dnabla(ambient_dim))) * d(operand)) -def normal_second_derivative(ambient_dim, operand, dim=None, dofdesc=None): +def normal_second_derivative( + ambient_dim: int, + operand, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): d = Derivative() n = normal(ambient_dim, dim, dofdesc) nabla = d.dnabla(ambient_dim) @@ -2090,7 +2247,10 @@ def Dp(kernel, *args, **kwargs): # {{{ conventional vector calculus -def tangential_onb(ambient_dim, dim=None, dofdesc=None): +def tangential_onb( + ambient_dim: int, + dim: int | None = None, + dofdesc: DOFDescriptorLike = None): """Return a matrix of shape ``(ambient_dim, dim)`` with orthogonal columns spanning the tangential space of the surface of *dofdesc*. """ @@ -2117,7 +2277,7 @@ def tangential_onb(ambient_dim, dim=None, dofdesc=None): return orth_pd_mat -def xyz_to_tangential(xyz_vec, dofdesc=None): +def xyz_to_tangential(xyz_vec, dofdesc: DOFDescriptorLike = None): ambient_dim = len(xyz_vec) tonb = tangential_onb(ambient_dim, dofdesc=dofdesc) return obj_array.new_1d([ @@ -2126,7 +2286,7 @@ def xyz_to_tangential(xyz_vec, dofdesc=None): ]) -def tangential_to_xyz(tangential_vec, dofdesc=None): +def tangential_to_xyz(tangential_vec, dofdesc: DOFDescriptorLike = None): ambient_dim = len(tangential_vec) + 1 tonb = tangential_onb(ambient_dim, dofdesc=dofdesc) return sum( @@ -2134,13 +2294,13 @@ def tangential_to_xyz(tangential_vec, dofdesc=None): for i in range(ambient_dim - 1)) -def project_to_tangential(xyz_vec, dofdesc=None): +def project_to_tangential(xyz_vec, dofdesc: DOFDescriptorLike = None): return tangential_to_xyz( cse(xyz_to_tangential(xyz_vec, dofdesc)), dofdesc) -def n_dot(vec, dofdesc=None): +def n_dot(vec, dofdesc: DOFDescriptorLike = None): nrm = normal(len(vec), dofdesc=dofdesc).as_vector() return np.dot(nrm, vec) @@ -2157,7 +2317,7 @@ def cross(vec_a, vec_b): for i in range(3)]) -def n_cross(vec, dofdesc=None): +def n_cross(vec, dofdesc: DOFDescriptorLike = None): return cross(normal(3, dofdesc=dofdesc).as_vector(), vec) diff --git a/pytential/symbolic/stokes.py b/pytential/symbolic/stokes.py index cfe8bef3c..a3e3c3079 100644 --- a/pytential/symbolic/stokes.py +++ b/pytential/symbolic/stokes.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2017 Natalie Beams" __license__ = """ @@ -22,8 +25,10 @@ import numpy as np +from sumpy.kernel import LaplaceKernel, StokesletKernel, StressletKernel + from pytential import sym -from sumpy.kernel import StokesletKernel, StressletKernel, LaplaceKernel + __doc__ = """ .. autoclass:: StokesletWrapper @@ -377,6 +382,7 @@ def apply_pressure(self, density_vec_sym, dir_vec_sym, mu_sym, qbx_forced_limit) """Symbolic expression for pressure field associated with the Stresslet.""" import itertools + from pytential.symbolic.mappers import DerivativeTaker kernel = LaplaceKernel(dim=self.dim) @@ -418,6 +424,7 @@ def apply_derivative(self, deriv_dir, density_vec_sym, dir_vec_sym, """ import itertools + from pytential.symbolic.mappers import DerivativeTaker sym_expr = np.empty((self.dim,), dtype=object) diff --git a/pytential/target.py b/pytential/target.py index a4b6c7092..ab0c6f4a8 100644 --- a/pytential/target.py +++ b/pytential/target.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2010-2013 Andreas Kloeckner" __license__ = """ @@ -29,6 +32,8 @@ .. autoclass:: TargetBase +.. autoclass:: TargetOrDiscretization + .. autoclass:: PointsTarget .. class:: Array @@ -37,12 +42,17 @@ """ from abc import ABC, abstractmethod -from typing import TYPE_CHECKING +from typing import TYPE_CHECKING, TypeAlias from arraycontext import Array +from meshmode.discretization import Discretization from pytools import T + if TYPE_CHECKING: + from arraycontext import Array + from pytools import T + from pytential.collection import GeometryCollection @@ -110,7 +120,7 @@ def nodes(self) -> Array: def preprocess_optemplate(self, name: str, - discretizations: "GeometryCollection", + discretizations: GeometryCollection, # FIXME: replace this with a pymbolic TypeVar bound to an actual # expression when that gets in expr: T) -> T: @@ -118,4 +128,6 @@ def preprocess_optemplate(self, return expr +TargetOrDiscretization: TypeAlias = TargetBase | Discretization + # vim: foldmethod=marker diff --git a/pytential/unregularized.py b/pytential/unregularized.py index 3c93439aa..0a740d53b 100644 --- a/pytential/unregularized.py +++ b/pytential/unregularized.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2017 Matt Wala """ @@ -22,21 +25,31 @@ THE SOFTWARE. """ -from typing import Any +import logging +from dataclasses import dataclass +from typing import TYPE_CHECKING, Any, Literal import numpy as np import loopy as lp -from loopy.version import MOST_RECENT_LANGUAGE_VERSION - -from pytools import memoize_method from arraycontext import PyOpenCLArrayContext, flatten, unflatten +from boxtree.tools import DeviceDataRecord +from loopy.version import MOST_RECENT_LANGUAGE_VERSION from meshmode.dof_array import DOFArray +from pytools import memoize_method -from boxtree.tools import DeviceDataRecord from pytential.source import LayerPotentialSourceBase -import logging + +if TYPE_CHECKING: + from collections.abc import Callable, Sequence + + from meshmode.discretization import Discretization + from sumpy.expansion import ExpansionFactoryBase + + from pytential.collection import GeometryLike + from pytential.target import TargetOrDiscretization + logger = logging.getLogger(__name__) @@ -54,10 +67,16 @@ class UnregularizedLayerPotentialSource(LayerPotentialSourceBase): .. attribute:: fmm_level_to_order """ - def __init__(self, density_discr, - fmm_order=False, - fmm_level_to_order=None, - expansion_factory=None, + density_discr: Discretization + fmm_level_to_order: Literal[False] | Callable[..., int] + expansion_factory: ExpansionFactoryBase + + debug: bool + + def __init__(self, density_discr: Discretization, + fmm_order: Literal[False] | int | None = False, + fmm_level_to_order: Literal[False] | Callable[..., int] | None = None, + expansion_factory: ExpansionFactoryBase | None = None, # begin undocumented arguments # FIXME default debug=False once everything works debug=True): @@ -102,6 +121,7 @@ def exec_compute_potential_insn(self, actx: PyOpenCLArrayContext, insn, bound_expr, evaluate, return_timing_data): if return_timing_data: from warnings import warn + from pytential.source import UnableToCollectTimingData warn( "Timing data collection not supported.", @@ -220,8 +240,6 @@ def exec_compute_potential_insn_fmm(self, actx: PyOpenCLArrayContext, insn, bound_expr, evaluate): # {{{ gather unique target discretizations used - from pytential.collection import GeometryLike - target_name_to_index = {} targets: tuple[GeometryLike, ...] = () @@ -307,12 +325,11 @@ def exec_compute_potential_insn_fmm(self, actx: PyOpenCLArrayContext, # {{{ fmm tools +@dataclass(frozen=True) class _FMMGeometryDataCodeContainer: - - def __init__(self, actx, ambient_dim, debug): - self.array_context = actx - self.ambient_dim = ambient_dim - self.debug = debug + array_context: PyOpenCLArrayContext + ambient_dim: int + debug: bool @property def cl_context(self): @@ -367,13 +384,12 @@ class _TargetInfo(DeviceDataRecord): """ +@dataclass(frozen=True) class _FMMGeometryData: - - def __init__(self, lpot_source, code_getter, target_discrs, debug=True): - self.lpot_source = lpot_source - self.code_getter = code_getter - self.target_discrs = target_discrs - self.debug = debug + lpot_source: UnregularizedLayerPotentialSource + code_getter: _FMMGeometryDataCodeContainer + target_discrs: Sequence[TargetOrDiscretization] + debug: bool @property def cl_context(self): diff --git a/pytential/utils.py b/pytential/utils.py index c28ea659b..e21e9d5a9 100644 --- a/pytential/utils.py +++ b/pytential/utils.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2020 Matt Wala Copyright (C) 2023 University of Illinois Board of Trustees @@ -24,9 +27,22 @@ """ import sys +from typing import TYPE_CHECKING, TypeVar + + +if TYPE_CHECKING: + from collections.abc import Callable, Sequence + + from useful_types import SupportsRichComparison + + +T = TypeVar("T") -def sort_arrays_together(*arys, key=None): +def sort_arrays_together( + *arys: Sequence[T], + key: Callable[[tuple[T, ...]], SupportsRichComparison] | None = None + ): """Sort a sequence of arrays by considering them as an array of sequences using the given sorting key diff --git a/pytential/version.py b/pytential/version.py index 6fa7fde4b..44f8124ba 100644 --- a/pytential/version.py +++ b/pytential/version.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018 Andreas Kloeckner" __license__ = """ @@ -24,6 +27,7 @@ from pytools import find_module_git_revision + VERSION_TEXT = metadata.version("pytential") VERSION = tuple(int(i) for i in VERSION_TEXT.split(".")) diff --git a/requirements.txt b/requirements.txt index 88777f180..e205325f5 100644 --- a/requirements.txt +++ b/requirements.txt @@ -10,6 +10,7 @@ git+https://github.com/inducer/islpy.git#egg=islpy git+https://github.com/inducer/loopy.git#egg=loopy git+https://github.com/inducer/boxtree.git#egg=boxtree git+https://github.com/inducer/arraycontext.git#egg=arraycontext +git+https://github.com/inducer/gmsh_interop/#egg=gmsh_interop git+https://github.com/inducer/meshmode.git#egg=meshmode git+https://github.com/inducer/sumpy.git#egg=sumpy git+https://github.com/inducer/pyfmmlib.git#egg=pyfmmlib diff --git a/test/extra_curve_data.py b/test/extra_curve_data.py index be38aec25..7bff9fb10 100644 --- a/test/extra_curve_data.py +++ b/test/extra_curve_data.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """Copyright (C) 2016 Matt Wala""" __license__ = """ diff --git a/test/extra_int_eq_data.py b/test/extra_int_eq_data.py index 20cb7fcbb..b1a5f8513 100644 --- a/test/extra_int_eq_data.py +++ b/test/extra_int_eq_data.py @@ -1,4 +1,7 @@ # pyright: reportIncompatibleVariableOverride=none, reportAssignmentType=none +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ @@ -21,20 +24,26 @@ THE SOFTWARE. """ -from collections.abc import Callable +import logging from dataclasses import dataclass, field -from typing import Any +from typing import TYPE_CHECKING, Any import numpy as np -from pytential import sym -from pytools import memoize_method -from sumpy.kernel import Kernel -from meshmode.mesh import MeshElementGroup, SimplexElementGroup -from meshmode.discretization import ElementGroupFactory from meshmode.discretization.poly_element import InterpolatoryQuadratureGroupFactory +from meshmode.mesh import MeshElementGroup, SimplexElementGroup +from pytools import memoize_method + +from pytential import sym + + +if TYPE_CHECKING: + from collections.abc import Callable + + from meshmode.discretization import ElementGroupFactory + from sumpy.kernel import Kernel + -import logging logger = logging.getLogger(__name__) @@ -362,7 +371,7 @@ class HelmholtzEllisoidTestCase(Helmholtz3DTestCase): check_gradient: bool = True def get_mesh(self, resolution, mesh_order): - from meshmode.mesh.io import generate_gmsh, FileSource + from meshmode.mesh.io import FileSource, generate_gmsh mesh = generate_gmsh( FileSource("ellipsoid.step"), 2, order=mesh_order, other_options=[ @@ -449,8 +458,8 @@ class GMSHSphereTestCase(SphereTestCase): default_factory=lambda: [0.4]) # type: ignore[list-item] def get_mesh(self, resolution, mesh_order): - from meshmode.mesh.io import ScriptSource from meshmode.mesh import SimplexElementGroup, TensorProductElementGroup + from meshmode.mesh.io import ScriptSource if issubclass(self.group_cls, SimplexElementGroup): script = ScriptSource( """ @@ -527,7 +536,7 @@ class MergedCubesTestCase(Helmholtz3DTestCase): outer_radius: float = 12.0 def get_mesh(self, resolution, mesh_order): - from meshmode.mesh.io import generate_gmsh, FileSource + from meshmode.mesh.io import FileSource, generate_gmsh mesh = generate_gmsh( FileSource("merged-cubes.step"), 2, order=mesh_order, other_options=[ @@ -555,7 +564,7 @@ class ManyEllipsoidTestCase(Helmholtz3DTestCase): nz: int = 2 def get_mesh(self, resolution, mesh_order): - from meshmode.mesh.io import generate_gmsh, FileSource + from meshmode.mesh.io import FileSource, generate_gmsh base_mesh = generate_gmsh( FileSource("ellipsoid.step"), 2, order=mesh_order, other_options=[ @@ -624,7 +633,7 @@ def get_mesh(self, resolution, mesh_order): "https://raw.githubusercontent.com/inducer/geometries/master/" "surface-3d/elliptiplane.brep") - from meshmode.mesh.io import generate_gmsh, FileSource + from meshmode.mesh.io import FileSource, generate_gmsh mesh = generate_gmsh( FileSource("elliptiplane.brep"), 2, order=mesh_order, other_options=[ @@ -681,7 +690,7 @@ def get_mesh(self, resolution, target_order): # {{{ source - from meshmode.mesh.io import generate_gmsh, ScriptWithFilesSource + from meshmode.mesh.io import ScriptWithFilesSource, generate_gmsh mesh = generate_gmsh( ScriptWithFilesSource(""" Merge "betterplane.brep"; diff --git a/test/extra_matrix_data.py b/test/extra_matrix_data.py index 60ca952c5..dea7b4a38 100644 --- a/test/extra_matrix_data.py +++ b/test/extra_matrix_data.py @@ -1,15 +1,20 @@ -from collections.abc import Callable +from __future__ import annotations + from dataclasses import dataclass -from typing import Any +from typing import TYPE_CHECKING, Any +import extra_int_eq_data as extra import numpy as np from pytools import obj_array from pytential import sym -from pytential.symbolic.dof_desc import DiscretizationStages -import extra_int_eq_data as extra + +if TYPE_CHECKING: + from collections.abc import Callable + + from pytential.symbolic.dof_desc import DiscretizationStages # {{{ MatrixTestCase diff --git a/test/test_beltrami.py b/test/test_beltrami.py index 3337928cf..0ca646c3a 100644 --- a/test/test_beltrami.py +++ b/test/test_beltrami.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2021 Alexandru Fikl" __license__ = """ @@ -20,26 +23,34 @@ THE SOFTWARE. """ +import logging from dataclasses import dataclass -import pytest -import numpy as np +import extra_int_eq_data as eid +import pytest -from meshmode import _acf # noqa: F401 from arraycontext import pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory from meshmode.dof_array import DOFArray from pytential import bind, sym from pytential.symbolic.pde.beltrami import ( - LaplaceBeltramiOperator, YukawaBeltramiOperator) + LaplaceBeltramiOperator, + YukawaBeltramiOperator, +) + -import extra_int_eq_data as eid -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from typing import TYPE_CHECKING + +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + + +if TYPE_CHECKING: + import numpy as np + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, diff --git a/test/test_cost_model.py b/test/test_cost_model.py index 988ec1d68..51b87339e 100644 --- a/test/test_cost_model.py +++ b/test/test_cost_model.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2018 Matt Wala Copyright (C) 2019 Hao Gao @@ -23,28 +26,31 @@ THE SOFTWARE. """ -import pytest +import logging import numpy as np +import pytest -from boxtree.fmm import TreeIndependentDataForWrangler +from arraycontext import pytest_generate_tests_for_array_contexts from boxtree.constant_one import ConstantOneExpansionWrangler -from sumpy.kernel import LaplaceKernel, HelmholtzKernel +from boxtree.fmm import TreeIndependentDataForWrangler +from meshmode import _acf # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from sumpy.kernel import HelmholtzKernel, LaplaceKernel from pytential import GeometryCollection, bind, sym from pytential.qbx import QBXLayerPotentialSource from pytential.qbx.cost import ( - QBXCostModel, _PythonQBXCostModel, make_pde_aware_translation_cost_model + QBXCostModel, + _PythonQBXCostModel, + make_pde_aware_translation_cost_model, ) -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import logging + logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -68,8 +74,9 @@ def test_compare_cl_and_py_cost_model(actx_factory): mesh = make_curve_mesh(starfish, np.linspace(0, 1, nelements), target_order) from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) pre_density_discr = Discretization( actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(target_order) @@ -284,12 +291,13 @@ def test_compare_cl_and_py_cost_model(actx_factory): def get_lpot_source(actx, dim): from meshmode.discretization import Discretization from meshmode.discretization.poly_element import ( - InterpolatoryQuadratureSimplexGroupFactory) + InterpolatoryQuadratureSimplexGroupFactory, + ) target_order = TARGET_ORDER if dim == 2: - from meshmode.mesh.generation import starfish, make_curve_mesh + from meshmode.mesh.generation import make_curve_mesh, starfish mesh = make_curve_mesh(starfish, np.linspace(0, 1, 50), order=target_order) elif dim == 3: from meshmode.mesh.generation import generate_torus @@ -697,8 +705,9 @@ def test_cost_model_correctness(actx_factory, dim, off_surface, # Construct targets. if off_surface: - from pytential.target import PointsTarget from boxtree.tools import make_uniform_particle_array + + from pytential.target import PointsTarget ntargets = 10 ** 3 targets = PointsTarget( make_uniform_particle_array(queue, ntargets, dim, np.float64)) diff --git a/test/test_global_qbx.py b/test/test_global_qbx.py index 9453bfd5d..61cf292e7 100644 --- a/test/test_global_qbx.py +++ b/test/test_global_qbx.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2013 Andreas Kloeckner Copyright (C) 2016 Matt Wala @@ -23,30 +26,29 @@ THE SOFTWARE. """ -import pytest -from functools import partial +import logging from dataclasses import dataclass +from functools import partial import numpy as np import numpy.linalg as la +import pytest +from extra_curve_data import horseshoe +from extra_int_eq_data import QuadSpheroidTestCase -from arraycontext import flatten -from pytential import GeometryCollection, bind, sym -from pytential.qbx import QBXLayerPotentialSource import meshmode.mesh.generation as mgen - -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import flatten, pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory -from extra_curve_data import horseshoe -from extra_int_eq_data import QuadSpheroidTestCase +from pytential import GeometryCollection, bind, sym +from pytential.qbx import QBXLayerPotentialSource + -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -91,8 +93,7 @@ def run_source_refinement_test(actx_factory, mesh, order, # {{{ initial geometry from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureGroupFactory + from meshmode.discretization.poly_element import InterpolatoryQuadratureGroupFactory discr = Discretization(actx, mesh, InterpolatoryQuadratureGroupFactory(order)) lpot_source = QBXLayerPotentialSource(discr, @@ -321,8 +322,9 @@ def test_target_association(actx_factory, curve_name, curve_f, nelements, mesh = mgen.make_curve_mesh(curve_f, np.linspace(0, 1, nelements+1), order) from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) factory = InterpolatoryQuadratureSimplexGroupFactory(order) discr = Discretization(actx, mesh, factory) @@ -402,7 +404,9 @@ def targets_from_sources(sign, dist, dim=2): # {{{ run target associator and check from pytential.qbx.target_assoc import ( - target_association_code_container, associate_targets_to_qbx_centers) + associate_targets_to_qbx_centers, + target_association_code_container, + ) code_container = target_association_code_container(actx) target_assoc = ( @@ -426,6 +430,7 @@ def targets_from_sources(sign, dist, dim=2): def visualize_curve_and_assoc(): import matplotlib.pyplot as plt + from meshmode.mesh.visualization import draw_curve draw_curve(density_discr.mesh) @@ -515,8 +520,9 @@ def test_target_association_failure(actx_factory): mesh = mgen.make_curve_mesh(curve_f, np.linspace(0, 1, nelements+1), order) from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) factory = InterpolatoryQuadratureSimplexGroupFactory(order) discr = Discretization(actx, mesh, factory) lpot_source = QBXLayerPotentialSource(discr, @@ -542,8 +548,10 @@ def test_target_association_failure(actx_factory): ) from pytential.qbx.target_assoc import ( - target_association_code_container, associate_targets_to_qbx_centers, - QBXTargetAssociationFailedError) + QBXTargetAssociationFailedError, + associate_targets_to_qbx_centers, + target_association_code_container, + ) code_container = target_association_code_container(actx) with pytest.raises(QBXTargetAssociationFailedError): diff --git a/test/test_layer_pot.py b/test/test_layer_pot.py index b966f7223..732cbcad8 100644 --- a/test/test_layer_pot.py +++ b/test/test_layer_pot.py @@ -1,5 +1,6 @@ from __future__ import annotations + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" __license__ = """ @@ -22,26 +23,25 @@ THE SOFTWARE. """ -import pytest +import logging from functools import partial import numpy as np +import pytest -from arraycontext import flatten -from pytential import bind, sym, norm -from pytential import GeometryCollection import meshmode.mesh.generation as mgen +from arraycontext import flatten, pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory from sumpy.visualization import FieldPlotter -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from pytential import GeometryCollection, bind, norm, sym + -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -61,8 +61,9 @@ def test_geometry(actx_factory): order) from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) discr = Discretization(actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(order)) @@ -99,10 +100,12 @@ def test_off_surface_eval(actx_factory, use_fmm, visualize=False): np.linspace(0, 1, nelements+1), target_order) - from pytential.qbx import QBXLayerPotentialSource from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) + + from pytential.qbx import QBXLayerPotentialSource pre_density_discr = Discretization( actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(target_order)) @@ -158,10 +161,12 @@ def test_off_surface_eval_vs_direct(actx_factory, do_plot=False): np.linspace(0, 1, nelements+1), target_order) - from pytential.qbx import QBXLayerPotentialSource from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) + + from pytential.qbx import QBXLayerPotentialSource pre_density_discr = Discretization( actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(target_order)) @@ -240,10 +245,12 @@ def test_single_plus_double_with_single_fmm(actx_factory, do_plot=False): np.linspace(0, 1, nelements+1), target_order) - from pytential.qbx import QBXLayerPotentialSource from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) + + from pytential.qbx import QBXLayerPotentialSource pre_density_discr = Discretization( actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(target_order)) @@ -336,8 +343,9 @@ def test_unregularized_with_ones_kernel(actx_factory): order) from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) discr = Discretization(actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(order)) @@ -384,10 +392,12 @@ def test_unregularized_off_surface_fmm_vs_direct(actx_factory): np.linspace(0, 1, nelements+1), target_order) - from pytential.unregularized import UnregularizedLayerPotentialSource from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) + + from pytential.unregularized import UnregularizedLayerPotentialSource density_discr = Discretization( actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(target_order)) @@ -465,8 +475,9 @@ def test_3d_jump_relations(actx_factory, relation, visualize=False): ) from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) pre_density_discr = Discretization( actx, mesh, InterpolatoryQuadratureSimplexGroupFactory(target_order)) diff --git a/test/test_layer_pot_eigenvalues.py b/test/test_layer_pot_eigenvalues.py index 88d71df05..aa8d0e270 100644 --- a/test/test_layer_pot_eigenvalues.py +++ b/test/test_layer_pot_eigenvalues.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013-7 Andreas Kloeckner" __license__ = """ @@ -20,25 +23,24 @@ THE SOFTWARE. """ -import pytest +import logging from functools import partial import numpy as np +import pytest -from arraycontext import flatten, unflatten -from pytential import bind, sym, norm -from pytential import GeometryCollection import meshmode.mesh.generation as mgen - -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import flatten, pytest_generate_tests_for_array_contexts, unflatten +from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import logging +from pytential import GeometryCollection, bind, norm, sym + + logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -71,11 +73,13 @@ def test_ellipse_eigenvalues(actx_factory, ellipse_aspect, mode_nr, qbx_order, target_order = 8 from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory - from pytential.qbx import QBXLayerPotentialSource + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) from pytools.convergence import EOCRecorder + from pytential.qbx import QBXLayerPotentialSource + s_eoc_rec = EOCRecorder() d_eoc_rec = EOCRecorder() sp_eoc_rec = EOCRecorder() @@ -274,11 +278,13 @@ def test_sphere_eigenvalues(actx_factory, mode_m, mode_n, qbx_order, target_order = 8 from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory - from pytential.qbx import QBXLayerPotentialSource + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) from pytools.convergence import EOCRecorder + from pytential.qbx import QBXLayerPotentialSource + s_eoc_rec = EOCRecorder() d_eoc_rec = EOCRecorder() sp_eoc_rec = EOCRecorder() diff --git a/test/test_layer_pot_identity.py b/test/test_layer_pot_identity.py index 39762b2e5..6e3328966 100644 --- a/test/test_layer_pot_identity.py +++ b/test/test_layer_pot_identity.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013-2017 Andreas Kloeckner" __license__ = """ @@ -20,26 +23,23 @@ THE SOFTWARE. """ -import pytest +import logging +import extra_int_eq_data as ied import numpy as np import numpy.linalg as la +import pytest -from arraycontext import flatten, unflatten -from pytential import bind, sym, norm -from pytential import GeometryCollection -from sumpy.kernel import LaplaceKernel, HelmholtzKernel -# from sumpy.visualization import FieldPlotter +from arraycontext import flatten, pytest_generate_tests_for_array_contexts, unflatten -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts +# from sumpy.visualization import FieldPlotter +from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from sumpy.kernel import HelmholtzKernel, LaplaceKernel -import extra_int_eq_data as ied -import logging +from pytential import GeometryCollection, bind, norm, sym +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) logger = logging.getLogger(__name__) pytest_generate_tests = pytest_generate_tests_for_array_contexts([ @@ -254,8 +254,9 @@ def test_identity_convergence(actx_factory, case, visualize=False): knl_kwargs = {"k": sym.var("k")} from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureGroupFactory, + ) pre_density_discr = Discretization( actx, mesh, InterpolatoryQuadratureGroupFactory(target_order)) diff --git a/test/test_linalg_proxy.py b/test/test_linalg_proxy.py index 99029b63d..b61871625 100644 --- a/test/test_linalg_proxy.py +++ b/test/test_linalg_proxy.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018 Alexandru Fikl" __license__ = """ @@ -20,28 +23,27 @@ THE SOFTWARE. """ -import pytest +import logging from functools import partial +import extra_matrix_data as extra import numpy as np import numpy.linalg as la +import pytest + +from arraycontext import flatten, pytest_generate_tests_for_array_contexts, unflatten +from meshmode import _acf # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from meshmode.mesh.generation import NArmedStarfish, ellipse -from arraycontext import flatten, unflatten -from pytential import bind, sym -from pytential import GeometryCollection +from pytential import GeometryCollection, bind, sym from pytential.linalg import ProxyGenerator, QBXProxyGenerator -from meshmode.mesh.generation import ellipse, NArmedStarfish -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import extra_matrix_data as extra -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -149,13 +151,12 @@ def plot_proxy_geometry( if pxy: # NOTE: this does not plot the actual proxy points, just sphere # with the same center and radius as the proxy balls - from meshmode.mesh.processing import ( - affine_map, merge_disjoint_meshes) from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory - + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) from meshmode.mesh.generation import generate_sphere + from meshmode.mesh.processing import affine_map, merge_disjoint_meshes ref_mesh = generate_sphere(1, 4, uniform_refinement_rounds=1) for i in range(cindex.nclusters): diff --git a/test/test_linalg_skeletonization.py b/test/test_linalg_skeletonization.py index bc61e3986..d7500fa58 100644 --- a/test/test_linalg_skeletonization.py +++ b/test/test_linalg_skeletonization.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018 Alexandru Fikl" __license__ = """ @@ -20,29 +23,33 @@ THE SOFTWARE. """ -from collections.abc import Sequence +import logging from dataclasses import replace from functools import partial -import pytest +import extra_matrix_data as extra import numpy as np import numpy.linalg as la +import pytest -from pytential import sym -from pytential import GeometryCollection - -from meshmode.mesh.generation import ellipse, NArmedStarfish - -from meshmode import _acf # noqa: F401 from arraycontext import pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from meshmode.mesh.generation import NArmedStarfish, ellipse + +from pytential import GeometryCollection, sym + -import extra_matrix_data as extra -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from typing import TYPE_CHECKING + +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + + +if TYPE_CHECKING: + from collections.abc import Sequence + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -145,8 +152,7 @@ def test_skeletonize_symbolic(actx_factory, case, visualize=False): # }}} - from pytential.linalg.skeletonization import ( - _skeletonize_block_by_proxy_with_mats) + from pytential.linalg.skeletonization import _skeletonize_block_by_proxy_with_mats rng = np.random.default_rng(42) _skeletonize_block_by_proxy_with_mats( @@ -236,8 +242,7 @@ def run_skeletonize_by_proxy(actx, case, resolution, logger.info("[time] dense matrix construction: %s", p) # skeleton - from pytential.linalg.skeletonization import \ - _skeletonize_block_by_proxy_with_mats + from pytential.linalg.skeletonization import _skeletonize_block_by_proxy_with_mats with ProcessTimer() as p: skeleton = _skeletonize_block_by_proxy_with_mats( actx, 0, 0, places, proxy_generator, wrangler, tgt_src_index, @@ -282,7 +287,9 @@ def run_skeletonize_by_proxy(actx, case, resolution, # {{{ check skeletonize from pytential.linalg.utils import ( - cluster_skeletonization_error, skeletonization_error) + cluster_skeletonization_error, + skeletonization_error, + ) with ProcessTimer() as p: blk_err_l, blk_err_r = cluster_skeletonization_error( diff --git a/test/test_linalg_utils.py b/test/test_linalg_utils.py index 05d94a225..668a43e83 100644 --- a/test/test_linalg_utils.py +++ b/test/test_linalg_utils.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2021 Alexandru Fikl" __license__ = """ @@ -20,20 +23,21 @@ THE SOFTWARE. """ -import pytest +import logging import numpy as np import numpy.linalg as la +import pytest -from meshmode import _acf # noqa: F401 from arraycontext import pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import logging + logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, diff --git a/test/test_matrix.py b/test/test_matrix.py index 5436377ae..221205814 100644 --- a/test/test_matrix.py +++ b/test/test_matrix.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2015 Andreas Kloeckner Copyright (C) 2018 Alexandru Fikl @@ -23,28 +26,27 @@ THE SOFTWARE. """ -import pytest +import logging from functools import partial +import extra_matrix_data as extra import numpy as np import numpy.linalg as la +import pytest -from arraycontext import flatten, unflatten -from pytential import bind, sym -from pytential import GeometryCollection +from arraycontext import flatten, pytest_generate_tests_for_array_contexts, unflatten +from meshmode import _acf # noqa: F401 # noqa: F401 # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from meshmode.mesh.generation import NArmedStarfish, ellipse from pytools import obj_array -from meshmode.mesh.generation import ellipse, NArmedStarfish -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from pytential import GeometryCollection, bind, sym + -import extra_matrix_data as extra -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -356,13 +358,15 @@ def test_cluster_builder(actx_factory, ambient_dim, } if cluster_builder_type == "qbx": - from pytential.symbolic.matrix import MatrixBuilder from pytential.symbolic.matrix import ( - QBXClusterMatrixBuilder as ClusterMatrixBuilder) + MatrixBuilder, + QBXClusterMatrixBuilder as ClusterMatrixBuilder, + ) elif cluster_builder_type == "p2p": - from pytential.symbolic.matrix import P2PMatrixBuilder as MatrixBuilder from pytential.symbolic.matrix import ( - P2PClusterMatrixBuilder as ClusterMatrixBuilder) + P2PClusterMatrixBuilder as ClusterMatrixBuilder, + P2PMatrixBuilder as MatrixBuilder, + ) kwargs["exclude_self"] = True else: raise ValueError(f"unknown cluster builder type: '{cluster_builder_type}'") diff --git a/test/test_maxwell.py b/test/test_maxwell.py index 76f1c6a81..e4e0d24e7 100644 --- a/test/test_maxwell.py +++ b/test/test_maxwell.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2017 Andreas Kloeckner" __license__ = """ @@ -20,27 +23,28 @@ THE SOFTWARE. """ +import logging from functools import partial -import pytest import numpy as np +import pytest -from pytential import bind, sym, norm -from pytential.target import PointsTarget -from sumpy.visualization import make_field_plotter_from_bbox +from arraycontext import pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from meshmode.mesh.processing import find_bounding_box from sumpy.point_calculus import CalculusPatch, frequency_domain_maxwell from sumpy.tools import vector_from_device -from meshmode.mesh.processing import find_bounding_box +from sumpy.visualization import make_field_plotter_from_bbox + +from pytential import bind, norm, sym +from pytential.target import PointsTarget -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -97,14 +101,14 @@ class RoundedCubeTestCase(MaxwellTestCase): gmres_tol = 1e-10 def get_mesh(self, resolution, target_order): - from meshmode.mesh.io import generate_gmsh, FileSource + from meshmode.mesh.io import FileSource, generate_gmsh mesh = generate_gmsh( FileSource("rounded-cube.step"), 2, order=3, other_options=[ "-string", "Mesh.CharacteristicLengthMax = %g;" % resolution]) - from meshmode.mesh.processing import perform_flips, affine_map + from meshmode.mesh.processing import affine_map, perform_flips mesh = affine_map(mesh, b=np.array([-0.5, -0.5, -0.5])) mesh = affine_map(mesh, A=np.eye(3)*2) @@ -146,7 +150,7 @@ def get_mesh(self, resolution, target_order): "https://raw.githubusercontent.com/inducer/geometries/master/" "surface-3d/elliptiplane.brep") - from meshmode.mesh.io import generate_gmsh, FileSource + from meshmode.mesh.io import FileSource, generate_gmsh mesh = generate_gmsh( FileSource("elliptiplane.brep"), 2, order=2, other_options=[ @@ -232,9 +236,10 @@ def test_pec_mfie_extinction(actx_factory, case, rho_sym = sym.var("rho") from pytential.symbolic.pde.maxwell import ( - PECChargeCurrentMFIEOperator, - get_sym_maxwell_point_source, - get_sym_maxwell_plane_wave) + PECChargeCurrentMFIEOperator, + get_sym_maxwell_plane_wave, + get_sym_maxwell_point_source, + ) mfie = PECChargeCurrentMFIEOperator() test_source = case.get_source(actx) @@ -280,12 +285,14 @@ def eval_inc_field_at(places, source=None, target=None): eoc_rec_e = EOCRecorder() eoc_rec_h = EOCRecorder() - from pytential.qbx import QBXLayerPotentialSource from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) from sumpy.expansion.level_to_order import SimpleExpansionOrderFinder + from pytential.qbx import QBXLayerPotentialSource + for resolution in case.resolutions: places = {} scat_mesh = case.get_mesh(resolution, case.target_order) diff --git a/test/test_muller.py b/test/test_muller.py index 4343fb560..330cab923 100644 --- a/test/test_muller.py +++ b/test/test_muller.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Shidong Jiang, Andreas Kloeckner" __license__ = """ @@ -20,9 +23,8 @@ THE SOFTWARE. """ -import pytest - import numpy as np +import pytest @pytest.mark.parametrize("true_roots", [ diff --git a/test/test_scalar_int_eq.py b/test/test_scalar_int_eq.py index bce947403..0c1a75041 100644 --- a/test/test_scalar_int_eq.py +++ b/test/test_scalar_int_eq.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ @@ -20,30 +23,27 @@ THE SOFTWARE. """ -import pytest +import logging +import extra_int_eq_data as inteq import numpy as np import numpy.linalg as la +import pytest -from arraycontext import flatten +from arraycontext import flatten, pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 # noqa: F401 # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory from meshmode.discretization.visualization import make_visualizer - -from sumpy.kernel import LaplaceKernel, HelmholtzKernel, BiharmonicKernel - -from pytential import bind, sym -from pytential import GeometryCollection from pytools import obj_array +from sumpy.kernel import BiharmonicKernel, HelmholtzKernel, LaplaceKernel + +from pytential import GeometryCollection, bind, sym -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import extra_int_eq_data as inteq -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -94,8 +94,8 @@ def run_int_eq_test(actx, ) vis_extend_factor = getattr(case, "vis_extend_factor", 0.2) - from sumpy.visualization import make_field_plotter_from_bbox from meshmode.mesh.processing import find_bounding_box + from sumpy.visualization import make_field_plotter_from_bbox fplot = make_field_plotter_from_bbox( find_bounding_box(qbx.density_discr.mesh), h=vis_grid_spacing, diff --git a/test/test_stokes.py b/test/test_stokes.py index ae3bb8d5a..487b19429 100644 --- a/test/test_stokes.py +++ b/test/test_stokes.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2017 Natalie Beams" __license__ = """ @@ -20,28 +23,27 @@ THE SOFTWARE. """ +import logging from functools import partial -import pytest +import extra_int_eq_data as eid import numpy as np +import pytest -from arraycontext import flatten -from pytential import GeometryCollection, bind, sym +from arraycontext import flatten, pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 # noqa: F401 # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory from meshmode.discretization import Discretization -from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureGroupFactory +from meshmode.discretization.poly_element import InterpolatoryQuadratureGroupFactory from pytools import obj_array -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from pytential import GeometryCollection, bind, sym + -import extra_int_eq_data as eid -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -89,7 +91,7 @@ def run_exterior_stokes(actx_factory, *, places = {} if ambient_dim == 2: - from meshmode.mesh.generation import make_curve_mesh, ellipse + from meshmode.mesh.generation import ellipse, make_curve_mesh mesh = make_curve_mesh( lambda t: radius * ellipse(aspect_ratio, t), np.linspace(0.0, 1.0, resolution + 1), @@ -131,8 +133,8 @@ def run_exterior_stokes(actx_factory, *, places["point_target"] = point_target if visualize: - from sumpy.visualization import make_field_plotter_from_bbox from meshmode.mesh.processing import find_bounding_box + from sumpy.visualization import make_field_plotter_from_bbox fplot = make_field_plotter_from_bbox( find_bounding_box(mesh), h=0.1, extend_factor=1.0) diff --git a/test/test_symbolic.py b/test/test_symbolic.py index 4633a909f..aa48008b2 100644 --- a/test/test_symbolic.py +++ b/test/test_symbolic.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2017 Matt Wala" __license__ = """ @@ -20,28 +23,29 @@ THE SOFTWARE. """ -import pytest +import logging from functools import partial import numpy as np import numpy.linalg as la +import pytest -from arraycontext import flatten, unflatten import meshmode.mesh.generation as mgen +from arraycontext import flatten, pytest_generate_tests_for_array_contexts, unflatten +from meshmode import _acf # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory from meshmode.discretization import Discretization -from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory +from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, +) + from pytential import bind, sym -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -180,7 +184,8 @@ def test_tangential_onb(actx_factory): def test_expr_pickling(): import pickle - from sumpy.kernel import LaplaceKernel, AxisTargetDerivative + + from sumpy.kernel import AxisTargetDerivative, LaplaceKernel ops_for_testing = [ sym.d_dx( @@ -444,7 +449,7 @@ def test_derivative_binder_expr(): # {{{ test_mapper_kernel_transformation_remover def _make_operator(ambient_dim: int, op_name: str, k: float, *, side: int = +1): - from sumpy.kernel import LaplaceKernel, HelmholtzKernel, Kernel + from sumpy.kernel import HelmholtzKernel, Kernel, LaplaceKernel if k == 0: kernel: Kernel = LaplaceKernel(ambient_dim) kernel_arguments = {} @@ -475,7 +480,9 @@ def test_mapper_kernel_transformation_remover(op_name, k): expr = op.operator(op.get_density_var("sigma")) from pytential.linalg.direct_solver_symbolic import ( - OperatorCollector, KernelTransformationRemover) + KernelTransformationRemover, + OperatorCollector, + ) expr_without_transformations = KernelTransformationRemover()(expr) intgs = OperatorCollector()(expr_without_transformations) @@ -526,8 +533,8 @@ def test_mapper_dof_descriptor_replacer(op_name, k): op = _make_operator(ambient_dim, op_name, k) expr = op.operator(op.get_density_var("sigma")) - from pytential.symbolic.mappers import ToTargetTagger from pytential.linalg.direct_solver_symbolic import DOFDescriptorReplacer + from pytential.symbolic.mappers import ToTargetTagger source_dd = sym.as_dofdesc(sym.DEFAULT_SOURCE) target_dd = sym.as_dofdesc(sym.DEFAULT_TARGET) tagged_expr = ToTargetTagger(source_dd, target_dd)(expr) diff --git a/test/test_target_specific_qbx.py b/test/test_target_specific_qbx.py index 45b8ccdb0..0b2c4c5fd 100644 --- a/test/test_target_specific_qbx.py +++ b/test/test_target_specific_qbx.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018 Matt Wala" __license__ = """ @@ -20,23 +23,23 @@ THE SOFTWARE. """ -import pytest +import logging import numpy as np +import pytest + +from arraycontext import flatten, pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 +from meshmode.array_context import PytestPyOpenCLArrayContextFactory +from sumpy.kernel import HelmholtzKernel, LaplaceKernel -from arraycontext import flatten from pytential import GeometryCollection, bind, sym -from sumpy.kernel import LaplaceKernel, HelmholtzKernel -from meshmode import _acf # noqa: F401 -from arraycontext import pytest_generate_tests_for_array_contexts -from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import logging logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -145,8 +148,10 @@ def test_target_specific_qbx(actx_factory, op, helmholtz_k, qbx_order): mesh = generate_sphere(1, target_order) from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) + from pytential.qbx import QBXLayerPotentialSource pre_density_discr = Discretization( actx, mesh, diff --git a/test/test_tools.py b/test/test_tools.py index db1d799da..e320e3e5b 100644 --- a/test/test_tools.py +++ b/test/test_tools.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" __license__ = """ @@ -20,21 +23,22 @@ THE SOFTWARE. """ -import pytest +import logging from functools import partial import numpy as np import numpy.linalg as la +import pytest -from meshmode import _acf # noqa: F401 from arraycontext import pytest_generate_tests_for_array_contexts +from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory -import logging + logger = logging.getLogger(__name__) -from pytential.utils import ( # noqa: F401 - pytest_teardown_function as teardown_function) +from pytential.utils import pytest_teardown_function as teardown_function # noqa: F401 + pytest_generate_tests = pytest_generate_tests_for_array_contexts([ PytestPyOpenCLArrayContextFactory, @@ -58,7 +62,7 @@ def test_gmres(): A_func.shape = A.shape A_func.dtype = A.dtype - from pytential.linalg.gmres import gmres, ResidualPrinter + from pytential.linalg.gmres import ResidualPrinter, gmres tol = 1e-6 sol = gmres(A_func, b, callback=ResidualPrinter(), maxiter=5*n, tol=tol).solution @@ -74,7 +78,7 @@ def test_interpolatory_error_reporting(actx_factory): actx = actx_factory() h = 0.2 - from meshmode.mesh.io import generate_gmsh, FileSource + from meshmode.mesh.io import FileSource, generate_gmsh mesh = generate_gmsh( FileSource("circle.step"), 2, order=4, force_ambient_dim=2, other_options=["-string", "Mesh.CharacteristicLengthMax = %g;" % h], @@ -86,8 +90,7 @@ def test_interpolatory_error_reporting(actx_factory): # {{{ discretizations and connections from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - QuadratureSimplexGroupFactory + from meshmode.discretization.poly_element import QuadratureSimplexGroupFactory vol_discr = Discretization(actx, mesh, QuadratureSimplexGroupFactory(5)) @@ -123,11 +126,12 @@ def test_geometry_collection_caching(actx_factory): ngeometry = 3 # construct discretizations + from meshmode.discretization import Discretization + from meshmode.discretization.poly_element import ( + InterpolatoryQuadratureSimplexGroupFactory, + ) from meshmode.mesh.generation import ellipse, make_curve_mesh from meshmode.mesh.processing import affine_map - from meshmode.discretization import Discretization - from meshmode.discretization.poly_element import \ - InterpolatoryQuadratureSimplexGroupFactory discrs = [] radius = 1.0 diff --git a/test/testlib.py b/test/testlib.py index 687e575b0..7eb23e3ce 100644 --- a/test/testlib.py +++ b/test/testlib.py @@ -1,9 +1,12 @@ +from __future__ import annotations + from functools import reduce +from pytential.symbolic.dof_desc import DOFDescriptor from pytential.symbolic.mappers import Collector -class DOFDescriptorCollector(Collector): +class DOFDescriptorCollector(Collector[DOFDescriptor]): r"""Gathers all the :class:`~pytential.symbolic.dof_desc.DOFDescriptor`\ s in an expression. """