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modules.json
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187 lines (187 loc) · 8.4 KB
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{
"name": "icgc-argo-workflows/dnaalnqc",
"homePage": "https://github.com/icgc-argo-workflows/dnaalnqc",
"repos": {
"https://github.com/icgc-argo-workflows/argo-modules.git": {
"modules": {
"icgc-argo-workflows": {
"checkinput": {
"branch": "main",
"git_sha": "d4806476507d2a3218341f470a165b609b2d1835",
"installed_by": ["modules", "stage_input"]
},
"cleanup": {
"branch": "main",
"git_sha": "8d014598ef81d65bece3684bd67aef7afae2cda9",
"installed_by": ["modules"]
},
"payload/qcmetrics": {
"branch": "main",
"git_sha": "11a36c1d261cdff47e61001fd0c778fc421f504c",
"installed_by": ["modules"]
},
"prep/metrics": {
"branch": "main",
"git_sha": "776aed82db95d2db324581aec0ed755e93d533b3",
"installed_by": ["modules"]
},
"prep/sample": {
"branch": "main",
"git_sha": "768fb64c290fe906e96c195c67d3b99f8da2e049",
"installed_by": ["stage_input"]
},
"samtools/index": {
"branch": "main",
"git_sha": "e1f2b946b457eac191c0fa97ae1d159a15874c6b",
"installed_by": ["stage_input"]
},
"score/download": {
"branch": "main",
"git_sha": "9790430f3f71990b5a5fadcb7cf169d11b8c93c7",
"installed_by": ["song_score_download"]
},
"score/upload": {
"branch": "main",
"git_sha": "9790430f3f71990b5a5fadcb7cf169d11b8c93c7",
"installed_by": ["song_score_upload"]
},
"song/get": {
"branch": "main",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_download"]
},
"song/manifest": {
"branch": "main",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_upload"]
},
"song/publish": {
"branch": "main",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_upload"]
},
"song/submit": {
"branch": "main",
"git_sha": "19ee48fdf1672ef9723e3093531be7ddea3e27ec",
"installed_by": ["song_score_upload"]
},
"tabix/tabix": {
"branch": "main",
"git_sha": "e1f2b946b457eac191c0fa97ae1d159a15874c6b",
"installed_by": ["stage_input"]
}
}
},
"subworkflows": {
"icgc-argo-workflows": {
"song_score_download": {
"branch": "main",
"git_sha": "92aa620385099e94401c22b8633cc55ed34ca10e",
"installed_by": ["stage_input"]
},
"song_score_upload": {
"branch": "main",
"git_sha": "92aa620385099e94401c22b8633cc55ed34ca10e",
"installed_by": ["subworkflows"]
},
"stage_input": {
"branch": "main",
"git_sha": "768fb64c290fe906e96c195c67d3b99f8da2e049",
"installed_by": ["subworkflows"]
}
}
}
},
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"gatk4/calculatecontamination": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"gatk4/gatherpileupsummaries": {
"branch": "master",
"git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
"installed_by": ["modules"]
},
"gatk4/getpileupsummaries": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"gatk4/intervallisttobed": {
"branch": "master",
"git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
"installed_by": ["modules"]
},
"mosdepth": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "7b50cb7be890e4b28cffb82e438cc6a8d7805d3f",
"installed_by": ["modules"]
},
"picard/bedtointervallist": {
"branch": "master",
"git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
"installed_by": ["modules"]
},
"picard/collecthsmetrics": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_qc_picard", "modules"]
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["bam_qc_picard"]
},
"picard/collectwgsmetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["bam_qc_picard", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"tabix/bgziptabix": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "9502adb23c0b97ed8e616bbbdfa73b4585aec9a1",
"installed_by": ["modules"]
},
"untarfiles": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"verifybamid/verifybamid2": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
}
}
}
}
}
}