Merge pull request #158 from icgc-argo-workflows/payload-gen-seq-experiment@0.7.0

[release]

Author: lindaxiang

payload-gen-seq-experiment/main.nf

@@ -19,13 +19,14 @@
   Authors:
     Linda Xiang
     Junjun Zhang
+    Edmund Su
 */
 
 /********************************************************************/
 /* this block is auto-generated based on info from pkg.json where   */
 /* changes can be made if needed, do NOT modify this block manually */
 nextflow.enable.dsl = 2
-version = '0.6.0.2'
+version = '0.7.0'
 
 container = [
     'ghcr.io': 'ghcr.io/icgc-argo-workflows/data-processing-utility-tools.payload-gen-seq-experiment'
@@ -53,7 +54,7 @@ params.schema_url="NO_FILE5"
 
 process payloadGenSeqExperiment {
   container "${params.container ?: container[params.container_registry ?: default_container_registry]}:${params.container_version ?: version}"
-  publishDir "${params.publish_dir}/${task.process.replaceAll(':', '_')}", mode: "copy", enabled: params.publish_dir
+  publishDir "${params.publish_dir}/${task.process.replaceAll(':', '_')}", mode: "copy", enabled: params.publish_dir ? true : false
 
   cpus params.cpus
   memory "${params.mem} GB"

payload-gen-seq-experiment/pkg.json

@@ -1,6 +1,6 @@
 {
     "name": "payload-gen-seq-experiment",
-    "version": "0.6.0.2",
+    "version": "0.7.0",
     "description": "SONG payload generation for sequencing experiment",
     "main": "main.nf",
     "deprecated": false,

payload-gen-seq-experiment/tests/checker.nf

@@ -29,7 +29,7 @@
 /* this block is auto-generated based on info from pkg.json where   */
 /* changes can be made if needed, do NOT modify this block manually */
 nextflow.enable.dsl = 2
-version = '0.6.0.2'
+version = '0.7.0'
 
 container = [
     'ghcr.io': 'ghcr.io/icgc-argo-workflows/data-processing-utility-tools.payload-gen-seq-experiment'