FATAL Flags parsing error: Unknown command line flag 'model_names'. Did you mean: model_preset ?

[RuiJoaoLoureiro2019]

Hi!
I'm trying to run the singularity version of AlphaFold but when I run the command line "./run.sh -d /veracruz/projects/r/rmblab/alphafold_singularity/COMPLEXES/ -o /veracruz/projects/r/rmblab/alphafold_singulari
ty/COMPLEXES/ -m model_1 -f NS-FL_4OPA.fa -t 2020-05-14" I get the following error message: "FATAL Flags parsing error: Unknown command line flag 'model_names'. Did you mean: model_preset ?". Any idea or suggestion on how to overcome this issue? I din't find any possible explanation for that.

With kind regards,
Rui João Loureiro

[SarahBeecroft]

you might need to update the run.sh to this more current version https://github.com/kalininalab/alphafold_non_docker/blob/main/run_alphafold.sh (and rename it to run.sh)

The authors of this singularity version have been using an older version of this script, so I found when I updated to the more current run_alphafold.sh it removed that error. I then rebuilt the container, since run.sh gets baked in when you build. I hope that's helpful :)

[RuiJoaoLoureiro2019]

Dear Sarah!

Thank you for your useful information.

Kind regards,
Rui João Loureiro