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Author: hutaobo

docs/usage/load_partial.md

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+# Load a partial Xenium dataset from Hugging Face
+
+This example uses the **public demo dataset** and the **v2 loader** that supports `base_url`.
+
+```python
+from pyXenium.io.partial_xenium_loader import load_anndata_from_partial
+
+BASE = "https://huggingface.co/datasets/hutaobo/pyxenium-gsm9116572/resolve/main"
+
+adata = load_anndata_from_partial(
+    base_url=BASE,
+    analysis_name="analysis.zarr.zip",
+    cells_name="cells.zarr.zip",
+    transcripts_name="transcripts.zarr.zip",
+    # Optional: if you uploaded a 10x MEX triplet under BASE/mex/
+    # mex_dir=BASE + "/mex",
+    # mex_matrix_name="matrix.mtx.gz",
+    # mex_features_name="features.tsv.gz",
+    # mex_barcodes_name="barcodes.tsv.gz",
+    build_counts_if_missing=True,
+)
+print(adata)