a

Author: hutaobo

pyproject.toml

@@ -1,35 +1,33 @@
 [build-system]
-requires = ["hatchling>=1.21"]
-build-backend = "hatchling.build"
+requires = ["setuptools>=69", "wheel"]
+build-backend = "setuptools.build_meta"
 
 [project]
 name = "pyXenium"
-version = "0.1.1"
-description = "Tools for reading and analyzing 10x Xenium data (toy dataset included)"
+version = "0.1.2"
+description = "Tools for reading and analyzing 10x Xenium data"
 readme = "README.md"
-authors = [{ name = "Taobo Hu", email = "taobo.hu@dbb.su.se" }]
+requires-python = ">=3.8"
 license = { text = "MIT" }
-requires-python = ">=3.9"
+authors = [{ name = "Taobo Hu", email = "taobo.hu@dbb.su.se" }]
 dependencies = [
+  "anndata>=0.10",
+  "click>=8.1",
+  "matplotlib>=3.8",
   "numpy>=1.24",
   "pandas>=2.0",
-  "anndata>=0.10",
-  "zarr>=2.16",
   "scikit-learn>=1.3",
   "scipy>=1.10",
-  "matplotlib>=3.8",
   "tqdm>=4.66",
-  "click>=8.1",
+  "zarr>=2.16",
 ]
 
-[project.scripts]
-pyxenium = "pyxenium.__main__:app"
-
-[tool.hatch.build]
-include = ["src/pyxenium/**", "README.md", "LICENSE", "docs/**", "mkdocs.yml"]
+[tool.setuptools]
+package-dir = {"" = "src"}
 
-[tool.hatch.build.targets.wheel]
-packages = ["src/pyxenium"]
+[tool.setuptools.packages.find]
+where = ["src"]
+include = ["pyXenium*"]
 
-[tool.pytest.ini_options]
-addopts = "-q"
+[tool.setuptools.package-data]
+pyXenium = ["data/**", "*.csv", "*.zarr", "*.txt"]

src/pyXenium/__init__.py

@@ -1 +1,2 @@
 from ._version import __version__
+from .io.partial_xenium_loader import load_anndata_from_partial