Meanings of segment names like 13_Quiescent?

[amadeusX]

Hi,
Many thanks for the Segway annotations of the HEK293 cell line.
Could you please let us know the biological meanings of the numbered segment names:
0_Quiescent
10_LowConfidence
11_Quiescent
12_RegPermissive
13_Quiescent
1_Quiescent
2_Quiescent
3_Quiescent
4_Quiescent
5_FacultativeHet
6_Quiescent
7_RegPermissive
8_Promoter
9_Promoter

This is quite different from the segmentation listed at https://hoffmanlab.org/proj/segway/2011_segmentation.html
Thank you very much!
Best,
Steve Ladunga

[michaelmhoffman]

@mlibbrecht I think this might be one of yours?

[mlibbrecht]

Hi Steve -- These are from our 2015 Genome Biology paper, which describes the different labels. The first number ("13_") is the original integer label from Segway, and the word ("Quiescent") is the biological meaning.

https://noble.gs.washington.edu/proj/encyclopedia/
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1784-2