simplot-cl/CITATION.cff at main · hodcroftlab/simplot-cl · GitHub

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cff-version: 1.2.0
title: "SimPlot-CL"
message: "If you use SimPlot-CL in your research, please cite it using the metadata below."
type: software

authors:
  - family-names: "Strotjohann"
    given-names: "Keno"
    orcid: "https://orcid.org/0009-0003-3675-3039"
    affiliation: "Swiss Tropical and Public Health Institute; University of Basel; Swiss Institute of Bioinformatics"
  - family-names: "Hodcroft"
    given-names: "Emma B"
    orcid: "https://orcid.org/0000-0002-0078-2212"
    affiliation: "Swiss Tropical and Public Health Institute; University of Basel; Swiss Institute of Bioinformatics"

repository-code: "https://github.com/hodcroftlab/simplot-cl"
url: "https://github.com/hodcroftlab/simplot-cl"

version: "1.0.3"
date-released: 2026-02-26

license: "AGPL-3.0-only"

keywords:
  - bioinformatics
  - viral genomics
  - recombination
  - similarity plot
  - sequence analysis
  - command-line tool

abstract: >
  SimPlot-CL is a lightweight, Python-based command-line tool for generating
  similarity plots (SimPlots) from nucleotide sequences.
  It enables automated, reproducible sliding-window similarity analysis
  for viral genomics.

identifiers:
  - type: doi
    value: 10.5281/zenodo.18863590