AB1_file_Analysis_Tool/warning_template.html at main · hivdb/AB1_file_Analysis_Tool · GitHub

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<!DOCTYPE html>
<html lang="en">
<head>
  <meta charset="utf-8">
  <meta name="viewport" content="width=device-width, initial-scale=1">
  <title>{{ title or "Trim Warning" }}</title>
  <style>
    body {
      margin: 0;
      padding: 24px;
      background: linear-gradient(180deg, #f4f6f8 0%, #e9edf1 100%);
      color: #1f2430;
      font-family: "Iowan Old Style", "Palatino Linotype", "Book Antiqua", serif;
    }
    .card {
      max-width: 960px;
      border: 1px solid #d9dfe7;
      border-radius: 16px;
      background: #f6f8fb;
      padding: 20px;
    }
    .banner {
      margin: 0 0 16px;
      padding: 12px 14px;
      border: 1px solid #f1c27d;
      border-radius: 12px;
      background: #fff3d6;
      color: #6f4e10;
      font-weight: 600;
    }
    h1 {
      margin: 0 0 12px;
      font-size: 1.8rem;
    }
    p, li {
      color: #1f2430;
      line-height: 1.5;
    }
    ul {
      margin: 0;
      padding-left: 20px;
    }
    code {
      font-family: "SFMono-Regular", Consolas, "Liberation Mono", monospace;
    }
  </style>
</head>
<body>
  <div class="card">
    {% if banner_message %}
    <div class="banner">{{ banner_message }}</div>
    {% endif %}
    <h1>{{ title or "Trim Warning" }}</h1>
    {% if intro_message %}
    <p>{{ intro_message }}</p>
    {% else %}
    <p>Read trimming removed all bases from one or more reads, so assembly was skipped.</p>
    <p>Current trimming rule requires a run of {{ min_consecutive_high_quality_bases }} consecutive bases with <code>Q&gt;={{ forward_min_phred_score_per_base }}</code> for forward and <code>Q&gt;={{ reverse_min_phred_score_per_base }}</code> for reverse.</p>
    {% if empty_reads %}
    <p>Affected reads:</p>
    <ul>
      {% for detail in empty_reads %}
      <li>{{ detail }}</li>
      {% endfor %}
    </ul>
    {% endif %}
    {% endif %}
    {% if footer_message %}
    <p>{{ footer_message }}</p>
    {% elif not intro_message %}
    <p>Check the QA report or lower <code>--min-phred-score-per-base</code> and/or <code>--min-consecutive-high-quality-bases</code>.</p>
    {% endif %}
  </div>
</body>
</html>