From 5f3a2a10d15ab0abc18338bd13b2427586bd73bd Mon Sep 17 00:00:00 2001 From: Thomas Kemmer Date: Fri, 20 Mar 2026 14:19:02 +0100 Subject: [PATCH 1/2] Update citation hints Signed-off-by: Thomas Kemmer --- CITATION.bib | 18 +++++++++++------- README.md | 5 +++++ 2 files changed, 16 insertions(+), 7 deletions(-) diff --git a/CITATION.bib b/CITATION.bib index af531dd..d9845bc 100644 --- a/CITATION.bib +++ b/CITATION.bib @@ -1,8 +1,12 @@ -@misc{BiochemicalVisualization.jl, - author = {Andreas Hildebrandt and contributors}, - title = {BiochemicalVisualization.jl}, - url = {https://github.com/hildebrandtlab/BiochemicalVisualization.jl}, - version = {v0.1.0}, - year = {2022}, - month = {12} +@article{BiochemicalAlgorithms.jl, + author = {Jennifer Leclaire and Thomas Kemmer and Andreas Hildebrandt}, + title = {Structure-based bioinformatics with BiochemicalAlgorithms.jl}, + journal = {Proceedings of the JuliaCon Conferences}, + publisher = {The Open Journal}, + volume = {7}, + number = {78}, + pages = {188}, + year = {2025}, + doi = {10.21105/jcon.00188}, + url = {https://doi.org/10.21105/jcon.00188} } diff --git a/README.md b/README.md index a921685..8404449 100644 --- a/README.md +++ b/README.md @@ -34,3 +34,8 @@ ball_and_stick(sys) # Contributing You have ideas for improvements, criticism, or ran into problems? You are looking for a feature that you know from BALL? Feedback and contributions are very welcome. Check out our [guidelines](CONTRIBUTING.md) and use our [issue tracker](https://github.com/hildebrandtlab/BiochemicalVisualization.jl/issues) or contact us [via e-mail](mailto:hildebrandtlab@uni-mainz.de?subject=BiochemicalVisualization.jl). + +## Citing +If you use BiochemicalVisualization.jl in your research, please cite the following publication: +> Leclaire et al., (2025). Structure-based bioinformatics with BiochemicalAlgorithms.jl. +> Proceedings of the JuliaCon Conferences, 7(78), 188, From a17cd242cb1af14c0a43cb581143acec955d3849 Mon Sep 17 00:00:00 2001 From: Thomas Kemmer Date: Fri, 20 Mar 2026 14:20:27 +0100 Subject: [PATCH 2/2] README: fix headings Signed-off-by: Thomas Kemmer --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 8404449..2f81676 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ BiochemicalVisualization is the graphical interface for [BiochemicalAlgorithms.jl](https://github.com/hildebrandtlab/BiochemicalAlgorithms.jl), providing different representations for biomolecular systems. All representations can be visualized in the form of interactive web widgets that are embeddable in Jypyter notebooks. -# Installation +## Installation To install BiochemicalVisualization, open a Julia REPL, switch to the package mode by pressing `]`, and type @@ -13,7 +13,7 @@ To install BiochemicalVisualization, open a Julia REPL, switch to the package mo pkg> add BiochemicalVisualization ``` -# Usage +## Usage ```julia using BiochemicalAlgorithms, BiochemicalVisualization @@ -31,7 +31,7 @@ ball_and_stick(sys) ``` ![Ball-and-stick representation of a simple molecule](https://raw.githubusercontent.com/hildebrandtlab/BiochemicalVisualization.jl/develop/docs/src/tutorials/gfx/ball-and-stick.png) -# Contributing +## Contributing You have ideas for improvements, criticism, or ran into problems? You are looking for a feature that you know from BALL? Feedback and contributions are very welcome. Check out our [guidelines](CONTRIBUTING.md) and use our [issue tracker](https://github.com/hildebrandtlab/BiochemicalVisualization.jl/issues) or contact us [via e-mail](mailto:hildebrandtlab@uni-mainz.de?subject=BiochemicalVisualization.jl).