-
Notifications
You must be signed in to change notification settings - Fork 6
Open
Description
Good evening!
I'm running into this error from time to time, depending on the input matrix => ValueError: negative dimensions are not allowed
I don't understand where this error comes from.
Any help would be appreciated,
Many thanks!
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
<ipython-input-20-775a9b82f10c> in <module>()
18 out_centrom_fig = "{}/{}/centromere_figures/{}.png".format(resolution_value, k_scf, os.path.basename(submatrix_path))
19
---> 20 CentromesOnSubamtrix(submatrix_path, resolution_value, centromere_record_file, out_centrom_fig)
21
<ipython-input-18-5b5b26e1311b> in CentromesOnSubamtrix(i_submatrix_file, i_resolution, o_file, o_fig)
63 # Call centromeres
64 try:
---> 65 centromeres = centromeres_calls.centromeres_calls(counts, lengths, resolution=i_resolution)
66 print(centromeres)
67 # Figure
/media/vadim/DATA/Local4T/Programs/miniconda3/envs/centurion_py27/lib/python2.7/site-packages/centurion/centromeres_calls.pyc in centromeres_calls(counts, lengths, resolution, init, n_candidate, sigma, verbose, filter_candidates, normalize)
21 if init is None:
22 counts_40kb, lengths_40kb = utils.downsample_resolution(
---> 23 counts, lengths, coefficient=coef)
24
25 if normalize:
/media/vadim/DATA/Local4T/Programs/miniconda3/envs/centurion_py27/lib/python2.7/site-packages/centurion/utils.pyc in downsample_resolution(counts, lengths, coefficient)
26 target_lengths = np.ceil(lengths.astype(float) / coefficient).astype(int)
27 target_counts = np.zeros((target_lengths.sum(),
---> 28 target_lengths.sum()))
29 begin_i, end_i = 0, 0
30 target_begin_i, target_end_i = 0, 0
ValueError: negative dimensions are not allowedReactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels