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import os
import argparse
import random
import numpy as np
import torch
import torch.optim as optim
import wandb
from datetime import datetime
from pathlib import Path
from src.utils.losses import DiceLoss, BCEDiceLoss, IOUDiceLoss, BCEIOUDiceLoss
from src.utils.metrics import iou_score
from src.utils.util import AverageMeter
from src.dataloader.dataset import get_dataloader
def seed_everything(seed):
"""Set random seed for reproducibility"""
random.seed(seed)
np.random.seed(seed)
torch.manual_seed(seed)
torch.cuda.manual_seed_all(seed)
os.environ["PYTHONHASHSEED"] = str(seed)
torch.backends.cudnn.deterministic = True
torch.backends.cudnn.benchmark = False
def get_args():
parser = argparse.ArgumentParser(description='U-RWKV Training')
# Model parameters
parser.add_argument('--model', type=str, default='urwkv',
choices=['urwkv', 'urwkv_attention', 'urwkv_vit', 'urwkv_fusion',
'unet', 'unext', 'unet3plus',
'dwconv_fusion'],
help='Model architecture')
parser.add_argument('--dims', type=str, default='24_48_96_192_384',
help='Model dimensions for each layer')
# Training parameters
parser.add_argument('--batch-size', type=int, default=32,
help='Batch size for training')
parser.add_argument('--epochs', type=int, default=200,
help='Number of epochs to train')
parser.add_argument('--lr', type=float, default=0.01,
help='Initial learning rate')
parser.add_argument('--weight-decay', type=float, default=1e-4,
help='Weight decay')
parser.add_argument('--seed', type=int, default=42,
help='Random seed')
# Dataset parameters
parser.add_argument('--dataset', type=str, default='busi',
choices=['busi', 'isic18', 'isic19', 'polyp'],
help='Dataset name')
parser.add_argument('--img-size', type=int, default=256,
help='Input image size')
parser.add_argument('--num-classes', type=int, default=1,
help='Number of classes')
# Loss parameters
parser.add_argument('--loss', type=str, default='dice',
choices=['dice', 'bce_dice', 'iou_dice', 'bce_iou_dice'],
help='Loss function')
# Logging parameters
parser.add_argument('--log-interval', type=int, default=10,
help='How many batches to wait before logging')
parser.add_argument('--save-interval', type=int, default=10,
help='How many epochs to wait before saving')
parser.add_argument('--experiment', type=str, default='default',
help='Experiment name for logging')
return parser.parse_args()
def get_model(args):
"""Get model based on arguments"""
dims = parse_list_arg(args.dims)
depths = parse_list_arg(args.depths)
kernels = parse_list_arg(args.kernels)
if args.model == 'urwkv':
from models.urwkv.base import URWKV
return URWKV(dims=dims, num_classes=args.num_classes)
elif args.model == 'urwkv_attention':
from models.urwkv.attention import URWKV_Attention
return URWKV_Attention(dims=dims, num_classes=args.num_classes)
elif args.model == 'urwkv_vit':
from models.urwkv.vit import URWKV_ViT
return URWKV_ViT(dims=dims, num_classes=args.num_classes)
elif args.model == 'urwkv_fusion':
from models.urwkv.fusion import URWKV_Fusion
return URWKV_Fusion(dims=dims, num_classes=args.num_classes)
elif args.model == 'unet':
from models.variants.unet import UNet
return UNet(output_ch=args.num_classes)
elif args.model == 'unext':
from models.variants.unext import UNext
return UNext(num_classes=args.num_classes)
elif args.model == 'unet3plus':
from models.variants.unet3plus import UNet3plus
return UNet3plus(n_classes=args.num_classes)
elif args.model == 'dwconv_fusion':
from models.variants.dwconv import DWConvFusion
return DWConvFusion(dims=dims, depths=depths, kernels=kernels, num_classes=args.num_classes)
else:
raise ValueError(f"Model {args.model} not supported")
def get_loss_fn(loss_type):
"""Get loss function based on type"""
if loss_type == 'dice':
return DiceLoss()
elif loss_type == 'bce_dice':
return BCEDiceLoss()
elif loss_type == 'iou_dice':
return IOUDiceLoss()
elif loss_type == 'bce_iou_dice':
return BCEIOUDiceLoss()
else:
raise ValueError(f"Loss type {loss_type} not supported")
def train_epoch(model, train_loader, criterion, optimizer, device, epoch, args):
"""Train for one epoch"""
model.train()
avg_meters = {'loss': AverageMeter(),
'iou': AverageMeter(),
'dice': AverageMeter()}
for batch_idx, batch in enumerate(train_loader):
images, targets = batch['image'].to(device), batch['label'].to(device)
optimizer.zero_grad()
outputs = model(images)
loss = criterion(outputs, targets)
# Calculate metrics
iou, dice, _, _, _, _, _ = iou_score(outputs, targets)
loss.backward()
optimizer.step()
# Update meters
avg_meters['loss'].update(loss.item(), images.size(0))
avg_meters['iou'].update(iou, images.size(0))
avg_meters['dice'].update(dice, images.size(0))
# Log progress
if batch_idx % args.log_interval == 0:
print(f'Train Epoch: {epoch} [{batch_idx * len(images)}/{len(train_loader.dataset)} '
f'({100. * batch_idx / len(train_loader):.0f}%)]\t'
f'Loss: {avg_meters["loss"].avg:.6f}\t'
f'IoU: {avg_meters["iou"].avg:.6f}\t'
f'Dice: {avg_meters["dice"].avg:.6f}')
return avg_meters
def validate(model, val_loader, criterion, device):
"""Validate the model"""
model.eval()
avg_meters = {'val_loss': AverageMeter(),
'val_iou': AverageMeter(),
'val_dice': AverageMeter(),
'val_se': AverageMeter(),
'val_pc': AverageMeter(),
'val_f1': AverageMeter(),
'val_acc': AverageMeter()}
with torch.no_grad():
for batch in val_loader:
images, targets = batch['image'].to(device), batch['label'].to(device)
outputs = model(images)
loss = criterion(outputs, targets)
# Calculate metrics
iou, dice, se, pc, f1, _, acc = iou_score(outputs, targets)
# Update meters
avg_meters['val_loss'].update(loss.item(), images.size(0))
avg_meters['val_iou'].update(iou, images.size(0))
avg_meters['val_dice'].update(dice, images.size(0))
avg_meters['val_se'].update(se, images.size(0))
avg_meters['val_pc'].update(pc, images.size(0))
avg_meters['val_f1'].update(f1, images.size(0))
avg_meters['val_acc'].update(acc, images.size(0))
return avg_meters
def main():
args = get_args()
seed_everything(args.seed)
# Setup device
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
# Initialize wandb
wandb.init(
project="U-RWKV",
name=f"{args.experiment}_{args.model}_{args.dataset}",
config=args.__dict__
)
# Create model
model = get_model(args).to(device)
# Get data loaders
train_loader, val_loader = get_dataloader(
dataset_name=args.dataset,
batch_size=args.batch_size,
img_size=args.img_size
)
# Setup training
criterion = get_loss_fn(args.loss).to(device)
optimizer = optim.AdamW(model.parameters(), lr=args.lr, weight_decay=args.weight_decay)
scheduler = optim.lr_scheduler.CosineAnnealingLR(optimizer, T_max=args.epochs)
# Training loop
best_iou = 0
for epoch in range(1, args.epochs + 1):
# Train
train_meters = train_epoch(model, train_loader, criterion, optimizer, device, epoch, args)
# Validate
val_meters = validate(model, val_loader, criterion, device)
# Update learning rate
scheduler.step()
# Log metrics
metrics = {
'epoch': epoch,
'lr': scheduler.get_last_lr()[0],
'train_loss': train_meters['loss'].avg,
'train_iou': train_meters['iou'].avg,
'train_dice': train_meters['dice'].avg,
'val_loss': val_meters['val_loss'].avg,
'val_iou': val_meters['val_iou'].avg,
'val_dice': val_meters['val_dice'].avg,
'val_se': val_meters['val_se'].avg,
'val_pc': val_meters['val_pc'].avg,
'val_f1': val_meters['val_f1'].avg,
'val_acc': val_meters['val_acc'].avg
}
wandb.log(metrics)
# Save best model
if val_meters['val_iou'].avg > best_iou:
best_iou = val_meters['val_iou'].avg
checkpoint_dir = Path(f'checkpoints/{args.experiment}')
checkpoint_dir.mkdir(parents=True, exist_ok=True)
model_path = checkpoint_dir / f'best_model_{args.model}_{args.dataset}.pth'
torch.save({
'epoch': epoch,
'model_state_dict': model.state_dict(),
'optimizer_state_dict': optimizer.state_dict(),
'best_iou': best_iou,
'args': args.__dict__
}, model_path)
print(f'=> Saved best model with IoU: {best_iou:.4f}')
# Print epoch summary
print(f'Epoch {epoch}/{args.epochs}:')
print(f'Train - Loss: {metrics["train_loss"]:.4f}, IoU: {metrics["train_iou"]:.4f}, Dice: {metrics["train_dice"]:.4f}')
print(f'Val - Loss: {metrics["val_loss"]:.4f}, IoU: {metrics["val_iou"]:.4f}, Dice: {metrics["val_dice"]:.4f}')
print(f'Val - SE: {metrics["val_se"]:.4f}, PC: {metrics["val_pc"]:.4f}, F1: {metrics["val_f1"]:.4f}, ACC: {metrics["val_acc"]:.4f}')
wandb.finish()
if __name__ == '__main__':
main()