Recurring TypeError with PrettyTree #48
Description
Hello! Thank you so much for making and maintaining this wonderful tool. I've been working through the pipeline, and while the code is able to run through the steps in ali_to_anc, I do keep getting an error that seems to be in the PrettyTree script, and the output directories do not have the pdfs with trees in them. I recreated the error on the python API by running the following:
>>> topiary.draw.tree("01_gene-tree")
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/global/home/users/auroraab/.conda/envs/topiary/lib/python3.10/site-packages/topiary/draw/tree.py", line 181, in tree
pt = PrettyTree(T,
File "/global/home/users/auroraab/.conda/envs/topiary/lib/python3.10/site-packages/topiary/draw/prettytree.py", line 91, in __init__
if issubclass(type(T),toytree.tree):
TypeError: issubclass() arg 2 must be a class, a tuple of classes, or a union
Am I missing a package or something? I installed everything according to the instructions... Is it a python version syntax problem? I am running Python 3.10.8 (which if I remember correctly was necessary for installing some of the accessory programs topiary uses).
Very grateful for any advice you can provide!
Aurora