seed-to-alignment unable to retrieve proteome for key species

[benclifton]

I attempted to generate an alignment based on four proteins: a pair of paralogous proteins from human and Arabidopsis thaliana.

This worked until reciprocal BLAST, where topiary was unable to retrieve the Arabidopsis proteome. It seems like topiary selected a genome assembly without an associated proteome, rather than the reference genome.

Following the instructions in the error message, I added a 'recip_blast' column to 01_initial-dataframe and tried restarting the pipeline, but I received the same error.

I'm not sure how general this problem might be, but it might be worth looking into.

Input csv file:
test_topiary_NRAMP.csv

Output from first run:
terminal_output_1.txt

Edited version of 01_initial-dataframe:
01_initial-dataframe.csv

Output from second run:
terminal_output_2.txt

[s-pew]

I am having a similar problem. Was there a resolution to this issue? Thanks!