I have question about Genotype information in SVtyper output

[u1200538]

Hello,

I run the svtyper by using lumpy SV vcf file as a input.
When I saw the genotyped sv file, it contained "./.", "0/0 genotype information.

1. In case of "./." genotype, as you can see above image, Those line's had a "." values in GQ and SQ section. Is it a validate data?

2. I think "0/0" genotype is not a suitable definitions of genetic variants category. Because, REF allele is same with ALT allele.

how do I interpret two kinds of the question that I wrote?

Thank you!