extract_dollop_output

[kavithamallayaa]

Hi,

I was trying to use extract_dollop_output_sequences_v2-fast.pl on outfile from dollop. But my output files "*newstyle_report.txt" has same node number getting repeated several times.
When I ran the script, the following message was shown
"Argument "Cpe29" isn't numeric in addition (+) at extract_dollop_output_sequences_v2-fast.pl line 375, <$[...]> line 248" for many lines.
Can please me help me with that.
[My data consist of 124 species and 87 states]
with regards
Kavitha

[guyleonard]

Hi Kavitha

I think this is caused by a lazy error on my part, the line above matches taxon names if they have a digit [0-9] in them - when it looks for internal node numbers, in retrospect this is a bad idea as sometimes people ( as in your case ) have digits in their taxon names. I have changed the regex match to specifically look for node numbers, so hopefully it should now work with your use case.

Let me know,
cheers Guy