Empty results of mfg

[zhangaicen]

Dear Guo，
Thanks for developing this great tool! Recently I am studying every detail function of CGmaptools, but when I used the mfg parameter （cgmaptools mfg -i CGmap.gz -r testbin.bed -c 2 -x CG > test.mfg），I got a blank file while the log file reported that it was successfully completed. the CGmap.gz file:
LG1 G 6782 CHH CA 0.33 1 3
LG1 G 6784 CHH CT 0.33 1 3
LG1 G 6806 CHH CT 0.67 2 3
LG1 G 6807 CHH CC 0.00 0 3
LG1 G 6815 CHH CT 0.67 2 3
LG1 G 6819 CHH CA 0.67 2 3
LG1 G 6824 CHH CT 0.33 1 3
LG1 G 6826 CHH CA 0.33 1 3
LG1 G 6843 CHH CT 0.00 0 5
LG1 C 6845 CHH CA 0.33 1 3
LG1 G 6853 CHH CT 0.00 0 4
LG1 G 6856 CHH CT 0.60 3 5
LG1 C 6861 CHH CC 0.00 0 4
LG1 C 6862 CHH CT 0.25 1 4
LG1 G 6867 CHH CT 0.40 2 5
LG1 C 6868 CG CG 1.00 4 4
LG1 G 6869 CG CG 1.00 5 5
LG1 G 6873 CHH CT 0.57 4 7
LG1 G 6874 CHH CC 0.38 3 8
LG1 C 6875 CHH CA 0.75 3 4
and the testbin.bed:
#chr chr U1 U2 U3 U4 U5 R1 R2 R3 R4 R5 D1 D2 D3 D4 End
LG1 - 23681 23631 23581 23531 23481 23431 23144 22857 22570 22283 21996 21946 21896 21846 21796
LG1 - 24569 24519 24469 24419 24369 24319 24128 23938 23748 23558 23368 23318 23268 23218 23168
LG1 + 31325 31375 31425 31475 31525 31575 31876 32177 32478 32779 33081 33131 33181 33231 33281
LG1 - 45248 45198 45148 45098 45048 44998 44696 44395 44094 43793 43492 43442 43392 43342 43292
LG1 - 47405 47355 47305 47255 47205 47155 46940 46726 46512 46298 46084 46034 45984 45934 45884
LG1 - 50415 50365 50315 50265 50215 50165 49837 49510 49183 48856 48529 48479 48429 48379 48329
LG1 - 53401 53351 53301 53251 53201 53151 52635 52120 51605 51090 50575 50525 50475 50425 50375
LG1 + 55274 55324 55374 55424 55474 55524 55825 56126 56427 56728 57030 57080 57130 57180 57230
LG1 + 57084 57134 57184 57234 57284 57334 58157 58981 59804 60628 61452 61502 61552 61602 61652
LG1 + 62957 63007 63057 63107 63157 63207 63502 63798 64093 64389 64685 64735 64785 64835 64885
LG1 - 67050 67000 66950 66900 66850 66800 66389 65978 65568 65157 64747 64697 64647 64597 64547
LG1 + 68688 68738 68788 68838 68888 68938 69554 70170 70786 71402 72019 72069 72119 72169 72219

I checked the bed file, and there were no negative values.
Could you please offer me some suggestions for solutions? Hope your response, thank you very much.

[Miaolingfeng]

It is not allowed to input compressed CGmap files. You can try "gunzip -c CGmap.gz | cgmaptools mfg -i -r testbin.bed -c 2 -x CG > test.mfg"