issue with creating graphics (fragreg, heatmap, etc) #75
Description
Hello,
I would like to create a metagene plot using fragreg and have prepared the .mfg files and merged list to do so. However, when I run the cgmaptools fragreg command I get the following error:
/usr/bin/env: Rscript: No such file or directory
I get the same message when trying to run other graphics commands, like heatmap. Yet, I have no issues with other commands like bed2fragreg and mfg.
Is there an additional program that must be loaded to use the graphics commands in cgmaptools? If not, do you have an idea of what may be happening? I have python loaded so it is not that.
The specific command I use is:
cgmaptools fragreg -i $SCRATCH/genomes/metagene/merged_mfg.txt -o merge.fragreg.pdf -f pdf
where: '$SCRATCH/genomes/metagene' is the source directory
'merged_mfg.txt' is the composite file of multiple .mfg files
Thanks,
Dave