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Description
Hello,
While trying to run:
richR::buildMSIGDB(species="human",keytype="SYMBOL",anntype="GO")
Using the version:
packageVersion("richR")
[1] ‘0.0.37’
I got the error:
Downloading msigdb datasets ...
Error in eval(e, x, parent.frame()) : object 'gs_cat' not found
When I checked the package version of msigdbr: ‘10.0.2’. And on the name of the columns there is no gs_cat,
res <- msigdbr(species = "Homo sapiens")
names(res)
[1] "gene_symbol" "ncbi_gene" "ensembl_gene" "db_gene_symbol" "db_ncbi_gene" "db_ensembl_gene" "source_gene" "gs_id" "gs_name"
[10] "gs_collection" "gs_subcollection" "gs_collection_name" "gs_description" "gs_source_species" "gs_pmid" "gs_geoid" "gs_exact_source" "gs_url"
[19] "db_version" "db_target_species"
Is there an specific version to use?, for both richR and msigdbr? Maybe I missed that information somewhere.
Thank you!!