test

#!/bin/bash

### Example pipeline

### (1) Inference
bin/PGBAR --data_file=data/soma/LineScan-11252022-0851-005_0/LineScan-11252022-0851-005_0_data_poisson.dat  \
				 --constants_file=constants/constants_template.json \
				 --output_folder=test \
				 --column=1 \
				 --tag=test \
                 --prior=pipelines/prior_from_single_0.dat \
				 --niter=200 


### (2) Extraction of statistical summaries
rargs=(
    test                                                                                   ## output folder
    data/soma/LineScan-11252022-0851-005_0/LineScan-11252022-0851-005_0_data_poisson.dat   ## dF/F
    1                                                                                      ## column index
    test                                                                                   ## tag used
    data/soma/LineScan-11252022-0851-005_0/stimtimes_poisson.dat                           ## ground truth stimulations (if known)
    20                                                                                     ## last samples to consider
)

Rscript webtools/SMC_make_summary.R ${rargs[@]}

## (3) This R script generates a file summary_test.json in the test folder which can be imported through the javascript app