Cannot install on CentOS 8.6

[theo-allnutt-bioinformatics]

Installing on CentOS 8.6 gives error shown below. Also tried unsuccessfully from source both git and .tar.gz versions. R version is 4.2.1.

Thanks.

BiocManager::install("ALDEx2")

....many 100s of lines then:

*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

• DONE (DelayedArray)
  ERROR: dependency 'RcppZiggurat' is not available for package 'Rfast'
• removing '/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/Rfast'
• installing source package 'GenomicRanges' ...
  ** using staged installation
  ** libs
  icc -I"/apps/R/4.2.1/lib64/R/include" -DNDEBUG -I'/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/S4Vectors/include' -I'/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/IRanges/include' -I/usr/local/include -fpic -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o
  icc -I"/apps/R/4.2.1/lib64/R/include" -DNDEBUG -I'/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/S4Vectors/include' -I'/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/IRanges/include' -I/usr/local/include -fpic -g -O2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
  icc -I"/apps/R/4.2.1/lib64/R/include" -DNDEBUG -I'/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/S4Vectors/include' -I'/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/IRanges/include' -I/usr/local/include -fpic -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
  icc -I"/apps/R/4.2.1/lib64/R/include" -DNDEBUG -I'/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/S4Vectors/include' -I'/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/IRanges/include' -I/usr/local/include -fpic -g -O2 -c transcript_utils.c -o transcript_utils.o
  icc -shared -L/apps/R/4.2.1/lib64/R/lib -L/usr/local/lib64 -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/apps/R/4.2.1/lib64/R/lib -lR
  installing to /home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/00LOCK-GenomicRanges/00new/GenomicRanges/libs
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  ** help
  *** installing help indices
  ** building package indices
  ** installing vignettes
  ** testing if installed package can be loaded from temporary location
  ** checking absolute paths in shared objects and dynamic libraries
  ** testing if installed package can be loaded from final location
  ** testing if installed package keeps a record of temporary installation path
• DONE (GenomicRanges)
• installing source package 'SummarizedExperiment' ...
  ** using staged installation
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  ** help
  *** installing help indices
  ** building package indices
  ** installing vignettes
  ** testing if installed package can be loaded from temporary location
  ** testing if installed package can be loaded from final location
  ** testing if installed package keeps a record of temporary installation path
• DONE (SummarizedExperiment)
  ERROR: dependency 'Rfast' is not available for package 'ALDEx2'
• removing '/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2/ALDEx2'

The downloaded source packages are in
'/scratch/nm31/ta0341/tmp/RtmpIEuhnQ/downloaded_packages'
Installation paths not writeable, unable to update packages
path: /apps/R/4.2.1/lib64/R/library
packages:
MASS, nlme, survival
Warning messages:
1: In install.packages(...) :
installation of package 'RcppGSL' had non-zero exit status
2: In install.packages(...) :
installation of package 'RcppZiggurat' had non-zero exit status
3: In install.packages(...) :
installation of package 'Rfast' had non-zero exit status
4: In install.packages(...) :
installation of package 'ALDEx2' had non-zero exit status

[theo-allnutt-bioinformatics]

install.packages("aldex_2.0.6.2.tar.gz", repos=NULL, type="source") Installing package into '/home/554/ta0341/R/x86_64-pc-linux-gnu-library/4.2'
(as 'lib' is unspecified)
Warning in untar2(tarfile, files, list, exdir, restore_times) :
skipping pax global extended headers
ERROR: cannot extract package from 'aldex_2.0.6.2.tar.gz'
Warning message:
In install.packages("aldex_2.0.6.2.tar.gz", repos = NULL, type = "source") :
installation of package 'aldex_2.0.6.2.tar.gz' had non-zero exit status

[lee-s17]

Hi
#35 (comment)
I noticed my issue share some similarities with yours: RcppZiggurat. I also tried both BiocManager and .tar.gz but could not install successfully. May I know if you have resolved your issue?

[theo-allnutt-bioinformatics]

Unfortunately, It is not resolved.