From 4878991d4f8c7ddb43328879d78692451b4ffe8b Mon Sep 17 00:00:00 2001
From: Ted McCormack <tmack@sgidna.com>
Date: Wed, 7 Feb 2018 19:57:11 +0000
Subject: [PATCH] Change InsertSize type from short to int for large sequences

---
 src/pindel.h | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/pindel.h b/src/pindel.h
index f54e45ff..1190863e 100644
--- a/src/pindel.h
+++ b/src/pindel.h
@@ -315,7 +315,7 @@ struct SPLIT_READ {
    char MatchedFarD;
    unsigned int MatchedRelPos;
    short MS; // rename MappingQuality ?
-   short InsertSize;
+   int InsertSize;
    std::string Tag; // rename SampleName ?
    std::map <std::string, unsigned> SampleName2Number;
    unsigned Thickness;