This repository was archived by the owner on Jan 31, 2020. It is now read-only.
This repository was archived by the owner on Jan 31, 2020. It is now read-only.
CRAM index support #110
Description
With an input CRAM file pindel expects the index to have an extension .cram.bai which is incorrect as CRAM files indexes have the extension .crai .
CRAM files that are correctly indexed generate the error 'I cannot find the bam index-file'.