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Should we pass Omni to BQSR? #1049

@jasonwalker80

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@jasonwalker80

BQSR should not need the omni VCF. The omni VCF is a list of sites used by verifyBamId for identifying contamination (really mixing of multiple samples).

- path: somatic_inputs/hla_and_brca_genes_omni.vcf.gz

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