From 8c983a699afb8415bfd2c1fb7033e118fffa351c Mon Sep 17 00:00:00 2001 From: Leona Nedeljkovic Date: Wed, 3 Dec 2025 11:43:18 +0100 Subject: [PATCH 1/2] ODM-12866: Add description to manageData.yaml --- openapi/v1/manageData.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/openapi/v1/manageData.yaml b/openapi/v1/manageData.yaml index 9feab064..476ebaf5 100644 --- a/openapi/v1/manageData.yaml +++ b/openapi/v1/manageData.yaml @@ -111,6 +111,7 @@ paths: * If you delete a `STUDY`, the entire study with all the listed group types and files, will be removed. * Deleting a `SAMPLE_GROUP` will result in the removal of all samples associated with this sample group, along with any linked `TABULAR_DATA`/`GENE_VARIANT`/`FLOW_CYTOMETRY`/`LIBRARY_GROUP`/`PREPARATION_GROUP`/`CELL_GROUP`. The linked `TABULAR_DATA`/`GENE_VARIANT`/`FLOW_CYTOMETRY`/`CELL_GROUP` will be deleted, even if it is linked to another metadata group. * Deleting a `LIBRARY_GROUP` or `PREPARATION_GROUP` will result in the removal of all libraries or preparations associated with this group, along with any linked `TABULAR_DATA`/`CELL_GROUP`. + * Deleting a `CELL_GROUP` will result in the removal of linked `TABULAR_DATA` (cell expression group). * If you delete `TABULAR_DATA`/`GENE_VARIANT`/`FLOW_CYTOMETRY`, all associated data, such as links and runs will be removed from ODM. * If you delete `REFERENCE_GENOME`, searching for variant by variantFeature (genes) won't be available for linked VCF groups. * If you delete `FILE`, the file will be removed from ODM. From 70282c530b7485a1722dac5dde054b76a3f71955 Mon Sep 17 00:00:00 2001 From: natalyatodorova Date: Tue, 6 Jan 2026 16:22:52 +0000 Subject: [PATCH 2/2] Revert "!![ODM-12925] Try naive fix (#522)" This reverts commit 483988388e4526a0785f79db56085b30af2cc102. --- Earthfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Earthfile b/Earthfile index b86a37ce..c25d2612 100644 --- a/Earthfile +++ b/Earthfile @@ -80,7 +80,7 @@ r-api-client: # Gcc and other stuff for R source packages building RUN \ apt update && \ - apt install -y libssl-dev libcurl4-gnutls-dev curl libcurl4t64:amd64=8.18.0~rc2-1 --allow-downgrades && \ + apt install -y libssl-dev libcurl4-gnutls-dev curl && \ Rscript requirements.R COPY +build/generated generated