Clinker producing "blank" plot for 2 identical sequences

[iqbal-lab]

Hi there

We're running clinker and finding it is making plots which have single lines for genomes, but no shadingh of shared blocks.
For example we tested with 2 identical plasmids (giving the second fasta a different name) and we see this

Is there something we are doing wrong?

[gamcil]

Hi, it looks like no gene annotations are being picked up here. Do you have corresponding GFF files for your input FASTA files?

[iqbal-lab]

sorry, i don't understand why I didn't get a notification for your message. will chase up and get examples