Merging Multiple Samples

Dear C. Mertes,

I would like to run FRASER on a dataset of 47 BAM files. However, when running the countRNAData function I keep getting out of memory errors. Is it possible to run fds <- countRNAData(createTestFraserSettings()) on each sample individually, and then merge the resulting fds objects? If not, do you know how I can best get around this issue? Thanks in advance!

[vyepez88]

Hi, you would have to run it in a cluster. You can count one sample at a time if needed.

[tbrittoborges]

Hi @vyepez88, after using countRNAData for each individual sample, how should we merge the individual samples before calculatePSIValues (#94)?