Refget Loader

Load reference sequences to Public Cloud Storage from a variety of data sources

Overview

Install the AWS Command Line Interface, and configure the CLI to run with an IAM user/profile that has write access to the S3 bucket of interest
Install the ena-refget-processor using the instructions provided, the scheduler will make use of its load_expanded_con.pl script

Clone repo and install locally

git clone https://github.com/ga4gh/ena-refget-scheduler.git
cd ena-refget-scheduler
python setup.py install

Confirm the scheduler has been installed by issuing:

ena-refget-scheduler