diff --git a/Makefile b/Makefile index d01b5ff..0fb35ce 100644 --- a/Makefile +++ b/Makefile @@ -8,6 +8,9 @@ in_dir = test/samples out_dir = test/build fa_dir = test/fasta +# Configurable parameters +MEMORY ?= 32GB + # Form Bio workflow deployment formbio_org := form-bio-solutions formbio_project := aav-qc-workshop @@ -42,9 +45,10 @@ formbio: clean # Test Nextflow pipeline execution +# Usage: make sc [MEMORY=8GB] # Default: 32GB sc ss min folder: %: params-local-%.json - nextflow run -profile local main.nf -params-file $< + nextflow run -profile local main.nf -params-file $< --memory '$(MEMORY)' # Test local execution and outputs