update the documentation

[wbszhu]

Hi,
It is a great tool! Could you please update the documentation as soon as possible?
I want to use it better, thanks!
LuZhang.

[zqbake]

Hi,
It is a great tool! Could you please update the documentation as soon as possible?
I want to use it better, thanks!
LuZhang.

Sure, thanks for you attention, this pipeline is not completed yet, though it does works. Can you supply more infos about your trying? Any way, there will be a runnable README before the next weekend.

[wbszhu]

Hi,
I have tried the hic.py, and there are 4 point:

1. cooler digest generate fragment-delimited genomic bins by a wrong way.(compared with DLO-HIC and the hic-pro )
   
2. I have finished a pipeline like Hi-C (in shell version) and trying to make it more like a tool by flowsaber. if i wanna use my own genome, what should i do?
3. As the foundation of python is rather poor, it was not very easy for me to understand. Even though I understood that the tool was very clear enough for someone with a solid foundation in python.
4. and the last one is: what is pgzip? It appears here（line 16）https://github.com/flowsaber/flowsaber-bio/blob/main/hic/environment.yml

Thank you for your prompt response.

LuZhang.

[zqbake]

Hi,

I have tried the hic.py, and there are 4 point:

1. cooler digest generate fragment-delimited genomic bins by a wrong way.(compared with DLO-HIC and the hic-pro )

2. I have finished a pipeline like Hi-C (in shell version) and trying to make it more like a tool by flowsaber. if i wanna use my own genome, what should i do?

3. As the foundation of python is rather poor, it was not very easy for me to understand. Even though I understood that the tool was very clear enough for someone with a solid foundation in python.

4. and the last one is: what is pgzip? It appears here（line 16）https://github.com/flowsaber/flowsaber-bio/blob/main/hic/environment.yml

Thank you for your prompt response.

LuZhang.

1. no idea of the cause,but the pipeline is able to use customized bed input and also the genome. Still need documentation.
2. Pgzip is a compression software just like gzip but is faster and also suits for genomic data.