Nice work!

[jenzopr]

Hi Florian!

Congratulations on the preprint and the work you've done! The paper reads very nicely and the methods you implemented seem promising for me.

Is there any work planned on your side to integrate Monet more with scanpy? I can imagine that this will boost the popularity of Monet methods.

Best and keep going!
Jens

[flo-compbio]

Hi Jens,

Thank you! Yes, interoperability with scanpy is high up on my list, I think it would be useful to be able to import expression data from AnnData objects. I'm also open to other suggestions in that area.

Best,
Florian

[jenzopr]

I'd like to try some of the methods, especially for integration and label transfer. Are there notebooks for usage available somewhere?

Best,
jens

[flo-compbio]

Hi Jens,

Thanks again for your interest! I'm working on the notebooks right now. I think I'll have them ready by Monday next week, will let you know here if I'm done earlier.

Best,
Florian

[flo-compbio]

Hi Jens,

I've uploaded a number of tutorial notebooks (see README). Please note that I've also made some updates to the package, so I recommend running pip install monet==0.2.1 to upgrade.

Let me know if you have any comments/questions!
Florian

[jenzopr]

Amazing! I'm not at work the next few days, but I'll check it once I'm back 🚀