fix: improve thread-aware estimation accuracy and clean up API #148
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| name: Integration Tests | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| tags: | |
| - "!**" | |
| workflow_call: | |
| env: | |
| UV_VERSION: 0.8.22 | |
| permissions: | |
| contents: read | |
| jobs: | |
| Integration: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| PYTHON_VERSION: ["3.12"] | |
| SNAKEMAKE_VERSION: ["8.30.0", "9.14.0"] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v7 | |
| with: | |
| version: "${{ env.UV_VERSION }}" | |
| python-version: "${{ matrix.PYTHON_VERSION }}" | |
| enable-cache: true | |
| cache-suffix: "integration-${{ matrix.PYTHON_VERSION }}-${{ matrix.SNAKEMAKE_VERSION }}" | |
| - name: Install dependencies with specific Snakemake version | |
| run: | | |
| uv sync --group dev | |
| # Override snakemake version | |
| uv pip install snakemake==${{ matrix.SNAKEMAKE_VERSION }} | |
| # Install logger plugin for testing | |
| cd snakemake-logger-plugin-snakesee && uv pip install -e . && cd .. | |
| - name: Show Snakemake version | |
| run: | | |
| uv run snakemake --version | |
| - name: Run integration tests | |
| run: | | |
| uv run pytest tests/integration -v --no-cov --tb=short |